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IMGVR_UViG_2617271048_000001-2617271048-2618611653

Arc-Vir

IMGVR_UViG_2617271048_000001-2617271048-2618611653

Identity

Kingdom:
archaea

Quality

82.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 80-191
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13610.13 best DDE_Tnp_IS240 34.3 3.50e-08 97.3% 77.0%
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7oufB01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.85 80.0 7.21e-01 100.0% 79.9%
1asuA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.82 77.0 6.71e-01 100.0% 77.2%
3kksB00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.82 77.0 6.82e-01 100.0% 73.7%
8b4hA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.81 75.0 6.56e-01 99.1% 80.9%
1bcoA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.80 74.0 5.85e-01 100.0% 73.4%
3ga2A00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.78 69.0 5.32e-01 94.6% 83.1%
3gocA00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.73 64.0 5.00e-01 93.8% 82.5%
3thxA02 3.30.420.110 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › MutS, connector domain 0.68 56.0 4.89e-01 87.5% 73.3%
2g8kA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.68 56.0 5.26e-01 88.4% 94.9%
2zgyA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.67 47.0 4.41e-01 73.2% 98.6%
3cqyB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.67 52.0 4.43e-01 83.0% 79.9%
1bqnA05 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.67 56.0 5.34e-01 91.1% 90.1%
3hrgA02 3.30.420.260 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, C-terminal domain 0.66 52.0 5.17e-01 85.7% 80.7%
1iv0A00 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.66 49.0 5.16e-01 77.7% 94.9%
4gniA03 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.65 47.0 5.20e-01 74.1% 97.7%
1nmnA00 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.64 52.0 5.11e-01 85.7% 87.5%
1vhxB00 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.64 53.0 4.98e-01 89.3% 87.7%
1atrA03 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.64 45.0 4.98e-01 73.2% 93.3%
1sz2B01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.64 50.0 4.91e-01 83.0% 86.7%
2hb5A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.64 57.0 5.22e-01 100.0% 88.7%
3d2fA03 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.63 44.0 4.80e-01 74.1% 88.2%
1t6cA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.63 48.0 4.62e-01 80.4% 90.4%
3zyyX04 3.30.420.480 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Domain of unknown function (DUF4445) 0.62 52.0 4.35e-01 89.3% 86.7%
3llcA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.62 47.0 3.61e-01 80.4% 85.8%
2n3zA00 3.40.50.11230 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.62 43.0 4.50e-01 80.4% 79.8%
3c6aA00 3.30.420.240 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.62 52.0 4.34e-01 92.9% 68.7%
5m1pB00 3.30.420.240 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.62 52.0 4.38e-01 92.0% 72.5%
2dstA00 3.40.50.12270 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.61 46.0 4.49e-01 78.6% 73.0%
8dkrB01 3.30.420.240 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.61 51.0 4.06e-01 92.0% 85.2%
2wbnA00 3.30.420.280 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.59 49.0 4.23e-01 92.0% 67.4%
2zskA01 3.40.50.1860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 44.0 4.44e-01 81.2% 94.0%
6gp1A00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.57 28.0 3.61e-01 87.5% 81.5%
2csuA03 3.40.50.261 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Succinyl-CoA synthetase domains 0.56 43.0 3.78e-01 80.4% 86.7%
6b6lA03 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.56 47.0 3.53e-01 88.4% 82.4%
1c4xA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.56 50.0 3.77e-01 100.0% 59.8%
2yutA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.55 41.0 3.38e-01 77.7% 92.0%
2dgmA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.55 44.0 3.20e-01 83.9% 54.4%
1lw7A01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.54 45.0 3.97e-01 92.9% 98.2%
2kpoA00 3.40.50.11230 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 41.0 4.14e-01 80.4% 84.5%
5c3uA02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 35.0 3.73e-01 87.5% 77.1%
3qtgA03 3.40.1380.20 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain 0.53 36.0 3.57e-01 89.3% 67.0%
3i3wA03 3.40.120.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 0.52 33.0 3.78e-01 82.1% 87.8%
3r0xA02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 34.0 3.36e-01 83.9% 61.8%
3oc4B03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.52 34.0 3.30e-01 97.3% 61.2%
2mswA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.51 39.0 3.82e-01 81.2% 84.8%
4ap5A02 3.40.50.11350 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 41.0 3.60e-01 86.6% 64.0%
3ktnA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.51 39.0 2.85e-01 82.1% 92.1%
3re1A01 3.40.50.10090 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 38.0 3.70e-01 78.6% 95.9%
1zitA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.51 38.0 3.74e-01 79.5% 89.3%
2cduA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.51 34.0 3.47e-01 98.2% 69.0%
1vkrA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.50 35.0 3.69e-01 77.7% 81.4%
2rirE01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.50 37.0 3.40e-01 78.6% 88.1%
ECOD (95)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5008405 2484.1.1.101 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 0.94 67.0 7.55e-01 74.1% 91.1%
3602926 2484.1.1.101 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 0.92 88.0 7.93e-01 100.0% 77.8%
5039061 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.92 86.0 6.68e-01 100.0% 51.2%
4933551 2484.1.1.101 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 0.90 86.0 7.69e-01 100.0% 77.7%
4927589 2484.1.1.101 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 0.90 86.0 6.98e-01 100.0% 76.3%
4952918 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.90 65.0 7.27e-01 78.6% 93.3%
4929599 2484.1.1.101 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 0.89 84.0 6.36e-01 100.0% 52.1%
4926839 2484.1.1.101 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 0.88 84.0 7.18e-01 100.0% 75.8%
4929499 2484.1.1.101 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 0.88 83.0 7.25e-01 100.0% 72.5%
3981925 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.88 72.0 6.81e-01 85.7% 80.8%
3165222 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.87 60.0 6.90e-01 70.5% 96.5%
3983425 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.87 68.0 6.39e-01 80.4% 76.2%
5028784 2484.1.1.117 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve_3 0.87 82.0 6.24e-01 100.0% 55.0%
3283910 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.87 82.0 7.26e-01 100.0% 78.1%
3519322 2484.1.1.194 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3 0.87 82.0 6.67e-01 100.0% 64.1%
4927805 2484.1.1.101 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 0.87 83.0 7.18e-01 100.0% 77.5%
3986284 2484.1.1.194 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3 0.87 82.0 6.65e-01 100.0% 62.1%
5027953 2484.1.1.101 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 0.87 82.0 6.77e-01 100.0% 68.1%
4928281 2484.1.1.101 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 0.87 82.0 6.25e-01 100.0% 51.9%
3589031 2484.1.1.101 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 0.87 83.0 6.93e-01 100.0% 65.1%
5027917 2484.1.1.101 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 0.86 82.0 6.19e-01 100.0% 51.7%
4957414 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.86 81.0 6.73e-01 100.0% 66.5%
4099374 2484.1.1.202 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_2 0.86 81.0 6.84e-01 100.0% 70.9%
None 0.86 81.0 6.47e-01 100.0% 82.9%
4952725 2484.1.1.101 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 0.86 76.0 7.06e-01 100.0% 77.0%
4958380 2484.1.1.199 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.86 81.0 5.85e-01 100.0% 69.3%
3985723 2484.1.1.194 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3 0.86 81.0 6.44e-01 100.0% 59.5%
3982837 2484.1.1.194 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3 0.86 81.0 6.95e-01 100.0% 73.9%
4008012 2484.1.1.202 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_2 0.86 80.0 6.66e-01 100.0% 65.9%
4064711 2484.1.1.199 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.86 80.0 6.10e-01 100.0% 82.1%
4943224 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.85 80.0 6.84e-01 100.0% 65.9%
4958309 2484.1.1.199 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.85 80.0 6.40e-01 100.0% 84.9%
5030453 2484.1.1.101 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 0.85 81.0 6.15e-01 100.0% 51.5%
4417589 2484.1.1.199 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.85 80.0 6.69e-01 100.0% 83.3%
3590178 2484.1.1.199 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.85 80.0 5.74e-01 100.0% 69.3%
3988130 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.85 77.0 7.45e-01 96.4% 96.0%
4944877 2484.1.1.117 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve_3 0.85 80.0 6.89e-01 100.0% 67.9%
3971375 2484.1.1.194 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3 0.85 80.0 6.56e-01 100.0% 64.9%
4530535 2484.1.1.199 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.85 79.0 5.65e-01 100.0% 65.7%
3956733 2484.1.1.199 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.85 79.0 5.69e-01 100.0% 67.5%
3985938 2484.1.1.194 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3 0.85 79.0 6.46e-01 100.0% 62.6%
4122250 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.85 80.0 5.81e-01 100.0% 72.4%
None 0.84 79.0 6.05e-01 100.0% 83.4%
4952348 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.84 80.0 6.49e-01 100.0% 85.0%
4643206 2484.1.1.199 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.84 79.0 6.59e-01 100.0% 72.2%
4952913 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.84 80.0 6.63e-01 100.0% 77.2%
4952496 2484.1.1.101 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 0.84 79.0 7.01e-01 100.0% 86.5%
3969957 2484.1.1.194 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3 0.84 79.0 6.49e-01 100.0% 63.7%
5029192 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.84 78.0 6.49e-01 98.2% 76.1%
3952404 2484.1.1.199 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.84 64.0 5.69e-01 78.6% 63.3%
5052885 2484.1.1.101 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 0.84 79.0 6.07e-01 100.0% 88.6%
3506369 2484.1.1.199 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.84 78.0 5.57e-01 100.0% 63.9%
3961927 2484.1.1.194 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3 0.84 78.0 6.85e-01 100.0% 78.1%
4943448 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.83 71.0 6.98e-01 90.2% 95.8%
3952641 2484.1.1.194 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3 0.83 78.0 6.37e-01 100.0% 64.1%
4959188 2484.1.1.199 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.83 78.0 6.28e-01 100.0% 79.5%
3962721 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.83 78.0 7.70e-01 100.0% 100.0%
4944586 2484.1.1.117 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve_3 0.83 77.0 6.49e-01 100.0% 70.6%
4238789 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.83 78.0 5.57e-01 100.0% 76.6%
5017720 2484.1.1.199 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.83 77.0 5.97e-01 100.0% 84.3%
2771818 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.83 76.0 6.53e-01 100.0% 64.7%
3958663 2484.1.1.199 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.82 62.0 5.21e-01 78.6% 53.3%
4958656 2484.1.1.199 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.82 76.0 5.49e-01 100.0% 67.5%
3588051 2484.1.1.202 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_2 0.82 76.0 6.39e-01 100.0% 66.7%
5019289 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.82 76.0 6.04e-01 98.2% 99.5%
5050956 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.82 76.0 5.33e-01 100.0% 64.5%
5017705 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.81 77.0 5.48e-01 100.0% 65.3%
3217119 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.81 75.0 5.29e-01 100.0% 66.5%
3953103 2484.1.1.102 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_ISL3 0.81 73.0 6.58e-01 100.0% 72.5%
3982525 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.80 56.0 6.10e-01 72.3% 92.6%
5053361 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.79 74.0 5.48e-01 100.0% 85.7%
4155925 2484.1.1.102 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_ISL3 0.79 74.0 6.69e-01 100.0% 82.1%
3787139 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.79 72.0 6.17e-01 100.0% 69.7%
3788859 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.78 71.0 5.89e-01 97.3% 64.3%
3990109 2484.1.1.102 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_ISL3 0.78 55.0 5.18e-01 76.8% 60.7%
3809500 2484.1.1.110 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MULE 0.77 70.0 5.42e-01 96.4% 65.2%
4966198 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.76 70.0 5.35e-01 100.0% 50.2%
5044528 2484.1.1.43 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.75 63.0 5.06e-01 90.2% 85.7%
5041843 2484.1.1.43 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.74 60.0 4.96e-01 87.5% 87.5%
4944954 2484.1.1.43 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.74 61.0 4.86e-01 88.4% 86.0%
4039156 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.72 61.0 6.17e-01 90.2% 96.4%
4639619 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.72 62.0 5.66e-01 93.8% 100.0%
4392478 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.71 59.0 6.15e-01 94.6% 99.0%
3962011 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.69 63.0 5.83e-01 99.1% 94.3%
4308615 2484.1.1.40 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.66 56.0 5.29e-01 92.0% 83.7%
5070100 2484.1.1.43 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.65 57.0 4.61e-01 97.3% 84.1%
4034552 2484.1.1.76 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_3C 0.65 56.0 4.78e-01 92.0% 76.6%
4975080 2484.1.1.77 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C 0.64 54.0 4.55e-01 91.1% 73.5%
5083931 2484.1.1.77 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C 0.63 53.0 4.61e-01 92.0% 77.7%
4972935 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.63 53.0 4.56e-01 92.0% 75.0%
4975081 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.62 52.0 4.71e-01 92.9% 76.8%
4988089 2484.1.1.77 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C 0.60 50.0 4.21e-01 90.2% 65.8%
1949055 2484.1.1.77 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C 0.58 49.0 4.16e-01 92.9% 60.5%
2623870 2484.1.1.44 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pox_A22 0.57 49.0 4.47e-01 92.9% 87.2%
3823293 2006.1.4.3 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › NYN 0.55 41.0 3.67e-01 79.5% 94.4%
D2 medium residues 1-76_192-211
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2c42A03 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.65 47.0 3.70e-01 77.1% 96.7%
1zp2A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.65 54.0 5.09e-01 95.8% 75.9%
2vixA02 1.10.150.630 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.60 49.0 5.12e-01 88.5% 100.0%
2fe3B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 48.0 5.04e-01 86.5% 100.0%
2p5kA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 38.0 4.54e-01 76.0% 100.0%
3lapA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 40.0 4.60e-01 76.0% 98.5%
1fc3B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 49.0 4.90e-01 99.0% 99.0%
4ejoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 41.0 3.94e-01 79.2% 68.8%
2ivxB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.55 46.0 4.07e-01 91.7% 68.6%
1mzbA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 43.0 4.64e-01 90.6% 100.0%
1w36C06 1.10.10.990 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.55 36.0 3.97e-01 71.9% 87.5%
2ew2A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.55 40.0 3.64e-01 78.1% 65.7%
1q1qA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 39.0 2.93e-01 77.1% 96.4%
5kdiA00 1.10.3520.10 Mainly Alpha › Orthogonal Bundle › Glycolipid transfer protein, GLTP › Glycolipid transfer protein 0.55 48.0 3.78e-01 100.0% 81.5%
3v53E00 1.20.1390.10 Mainly Alpha › Up-down Bundle › PWI domain › PWI domain 0.54 39.0 3.88e-01 100.0% 72.5%
1uaaA02 1.10.10.160 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.54 38.0 4.20e-01 84.4% 98.6%
3fhgA02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.53 40.0 3.83e-01 81.2% 83.2%
3vw4A01 1.10.340.50 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › 0.53 38.0 3.94e-01 77.1% 83.7%
3e3rB01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.51 37.0 3.90e-01 76.0% 89.4%
1pujA02 1.10.1580.10 Mainly Alpha › Orthogonal Bundle › Conserved Hypothetical Protein Ylqf; Chain: A; domain 2 › 0.51 31.0 3.16e-01 99.0% 60.2%
2nnwA02 1.10.287.4070 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.51 44.0 4.08e-01 100.0% 75.6%
4dtdA02 1.10.3680.20 Mainly Alpha › Orthogonal Bundle › TerB-like › Actin cross-linking domain 0.51 41.0 3.71e-01 90.6% 89.1%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5039061 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.85 74.0 5.61e-01 93.8% 97.7%
5040994 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.80 58.0 6.50e-01 75.0% 100.0%
3590474 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 51.0 5.39e-01 80.2% 75.3%
5044657 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 44.0 5.43e-01 84.4% 98.3%
3590551 101.1.2.244 alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.72 39.0 5.10e-01 72.9% 100.0%
3983493 101.1.2.244 alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.72 38.0 4.99e-01 72.9% 98.0%
4979742 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 43.0 4.73e-01 83.3% 75.0%
3941666 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.70 48.0 5.46e-01 78.1% 91.9%
4989419 4156.1.1.7 alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › DUF5814 0.65 54.0 5.05e-01 88.5% 95.7%
3504540 101.1.2.244 alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.65 37.0 4.59e-01 72.9% 98.2%
4974021 4156.1.1.0 alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like 0.64 53.0 4.35e-01 89.6% 89.7%
5022239 4156.1.1.7 alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › DUF5814 0.62 52.0 4.43e-01 91.7% 94.4%
3727859 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.58 48.0 3.49e-01 99.0% 32.5%
3283604 101.1.3.4 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.58 47.0 4.66e-01 100.0% 85.0%
3411170 101.1.2.306 alpha arrays › HTH › HTH › winged helix domain › NPR2 0.57 41.0 4.55e-01 81.2% 98.7%
3959738 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.56 45.0 4.59e-01 100.0% 88.4%
3253015 6088.1.1.2 alpha arrays › Helical bundle domain in elongation factor 3A › Helical bundle domain in elongation factor 3A › Helical bundle domain in elongation factor 3A › PF26051 0.56 43.0 4.59e-01 82.3% 100.0%
3677398 3567.1.1.93 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › Tcp11 0.55 49.0 3.56e-01 100.0% 79.9%
3250611 101.1.2.306 alpha arrays › HTH › HTH › winged helix domain › NPR2 0.54 40.0 4.33e-01 79.2% 100.0%
3233722 631.1.1.1 alpha arrays › Glycolipid transfer protein, GLTP › Glycolipid transfer protein, GLTP › Glycolipid transfer protein, GLTP › GLTP 0.54 45.0 3.63e-01 100.0% 84.5%
4407580 206.1.1.12 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › SelO 0.53 46.0 3.03e-01 100.0% 64.0%
3787521 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.53 45.0 3.81e-01 95.8% 59.4%
5057544 2006.1.1.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.51 41.0 3.32e-01 91.7% 66.0%
4219793 606.1.1.0 alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain 0.50 41.0 3.65e-01 92.7% 60.7%