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IMGVR_UViG_2617271222_000001-2617271222-2619159601

Arc-Vir

IMGVR_UViG_2617271222_000001-2617271222-2619159601

Identity

Kingdom:
archaea

Quality

88.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 95-167
PDB
Domain cluster: representative
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1x2mA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.72 48.0 5.37e-01 76.7% 92.6%
1rr7A02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.72 38.0 4.60e-01 71.2% 79.2%
2dn0A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.72 47.0 4.67e-01 72.6% 64.5%
1uhsA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.70 46.0 5.26e-01 75.3% 90.7%
2da7A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.69 46.0 4.72e-01 76.7% 70.4%
1x2nA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.69 48.0 5.12e-01 72.6% 88.3%
2ys9A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.69 44.0 4.52e-01 79.5% 68.6%
2kt0A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.67 42.0 5.09e-01 76.7% 100.0%
1lfuP00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.66 46.0 4.45e-01 74.0% 64.6%
2w9zA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.66 48.0 3.91e-01 76.7% 85.0%
1bw5A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.65 42.0 4.37e-01 72.6% 72.7%
2mw8A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 43.0 4.49e-01 76.7% 74.6%
2dwkA00 1.20.58.900 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RUN domain 0.64 54.0 4.27e-01 95.9% 95.0%
1g3nC01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.63 46.0 3.87e-01 76.7% 91.7%
2o0aA00 3.40.850.20 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › 0.63 54.0 3.73e-01 98.6% 100.0%
2k9sA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.63 47.0 4.15e-01 79.5% 54.2%
1wh5A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.63 42.0 4.15e-01 72.6% 63.7%
1fc3B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 45.0 4.07e-01 76.7% 79.2%
2x26A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.62 43.0 3.16e-01 71.2% 75.1%
3kxaA02 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.61 45.0 4.72e-01 76.7% 86.4%
4gtnA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.60 44.0 4.45e-01 83.6% 77.0%
3h4cA02 1.10.472.110 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › 0.60 43.0 3.83e-01 78.1% 88.2%
4pcqA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 39.0 4.37e-01 89.0% 100.0%
3f8mA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 45.0 4.69e-01 93.2% 96.9%
1z21A00 1.10.10.1000 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Type III secretion system virulence factor YopR, core domain 0.58 48.0 4.45e-01 91.8% 96.9%
1d3yA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 44.0 4.50e-01 86.3% 100.0%
2imiB02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.58 51.0 4.16e-01 100.0% 87.9%
5d0yA00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.57 48.0 3.86e-01 97.3% 82.6%
2om6A02 1.10.150.400 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.57 42.0 4.09e-01 76.7% 74.7%
4hr1A00 1.20.1270.410 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.56 43.0 3.63e-01 80.8% 74.6%
4km3B00 3.90.230.10 Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily 0.56 44.0 3.07e-01 100.0% 23.8%
3h5qA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.56 40.0 4.14e-01 84.9% 81.4%
2hs5A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 42.0 4.39e-01 91.8% 92.5%
3u60E02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.55 39.0 4.30e-01 78.1% 91.5%
5h5mA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.55 47.0 4.00e-01 100.0% 77.7%
1hw1A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 44.0 4.39e-01 100.0% 89.3%
2ef8A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.55 38.0 3.63e-01 71.2% 77.4%
4pxoA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.54 44.0 3.72e-01 93.2% 74.0%
3hdtA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 37.0 2.96e-01 74.0% 80.4%
1a04A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 38.0 3.74e-01 89.0% 68.8%
2b1eA04 1.20.1280.170 Mainly Alpha › Up-down Bundle › Monooxygenase › Exocyst complex component Exo70 0.54 46.0 3.80e-01 93.2% 64.6%
3tqnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 44.0 4.48e-01 97.3% 95.9%
6teyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 40.0 4.08e-01 93.2% 83.6%
4a6dA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 40.0 3.78e-01 94.5% 63.8%
5xsoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 36.0 3.64e-01 89.0% 68.4%
3w6vA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.53 47.0 4.12e-01 100.0% 82.0%
2gloA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.53 34.0 3.66e-01 71.2% 81.4%
1xdpA01 1.20.58.310 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Polyphosphate kinase N-terminal domain 0.53 46.0 4.13e-01 100.0% 94.3%
3by6C01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 43.0 4.30e-01 100.0% 92.2%
4p9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 42.0 4.34e-01 100.0% 100.0%
8ea4D01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 43.0 3.37e-01 93.2% 81.8%
3py8A04 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.51 43.0 3.57e-01 98.6% 73.6%
6az6A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 41.0 4.07e-01 100.0% 88.0%
3bwgB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 41.0 4.23e-01 94.5% 100.0%
2oap101 3.30.450.380 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.50 42.0 3.13e-01 100.0% 69.6%
6x6nA01 1.20.120.260 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Virulence factor YopE uncharacterised domain 0.50 42.0 3.70e-01 100.0% 76.9%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4585396 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.72 45.0 3.47e-01 71.2% 29.4%
3947986 101.1.1.63 alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 0.71 48.0 5.24e-01 76.7% 85.0%
3889955 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.70 45.0 5.11e-01 72.6% 87.3%
3259221 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.69 48.0 5.16e-01 72.6% 91.7%
3528634 101.1.1.36 alpha arrays › HTH › HTH › Three-helical HTH › Homeobox_KN 0.69 48.0 4.60e-01 72.6% 63.5%
3942431 101.1.2.6 alpha arrays › HTH › HTH › winged helix domain › GntR 0.68 54.0 5.35e-01 83.6% 97.3%
3911740 101.1.1.36 alpha arrays › HTH › HTH › Three-helical HTH › Homeobox_KN 0.68 46.0 5.12e-01 75.3% 94.5%
3462938 101.1.1.269 alpha arrays › HTH › HTH › Three-helical HTH › DUF7769 0.68 44.0 4.64e-01 72.6% 73.8%
3177091 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.65 47.0 4.79e-01 76.7% 82.9%
3507783 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.65 42.0 4.57e-01 80.8% 78.3%
4155556 101.1.1.36 alpha arrays › HTH › HTH › Three-helical HTH › Homeobox_KN 0.65 47.0 4.53e-01 78.1% 78.8%
4974615 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.64 51.0 5.21e-01 86.3% 94.3%
3343813 101.1.1.36 alpha arrays › HTH › HTH › Three-helical HTH › Homeobox_KN 0.64 48.0 5.04e-01 93.2% 90.8%
3232527 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 55.0 4.93e-01 98.6% 87.6%
3423120 101.1.1.36 alpha arrays › HTH › HTH › Three-helical HTH › Homeobox_KN 0.63 44.0 3.96e-01 74.0% 55.2%
2323888 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.63 43.0 3.85e-01 78.1% 49.5%
4994385 2006.1.1.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.62 48.0 3.39e-01 83.6% 52.6%
3935496 101.1.10.9 alpha arrays › HTH › HTH › Cyclin-like › Cyclin 0.61 44.0 3.33e-01 76.7% 52.8%
3573645 7556.1.1.1 a/b three-layered sandwiches › Fe-only hydrogenase › Fe-only hydrogenase › Fe-only hydrogenase › Fe_hyd_lg_C 0.61 50.0 3.35e-01 90.4% 67.6%
3390609 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.60 44.0 3.34e-01 78.1% 51.4%
3281935 101.1.2.6 alpha arrays › HTH › HTH › winged helix domain › GntR 0.60 52.0 5.25e-01 98.6% 96.0%
3693234 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.59 46.0 4.61e-01 83.6% 81.3%
3706499 604.9.1.0 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 0.59 45.0 4.90e-01 83.6% 100.0%
3971213 101.1.2.6 alpha arrays › HTH › HTH › winged helix domain › GntR 0.59 51.0 5.07e-01 95.9% 96.0%
4969211 2006.1.1.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.59 44.0 3.12e-01 80.8% 53.0%
3280481 101.1.2.6 alpha arrays › HTH › HTH › winged helix domain › GntR 0.59 50.0 5.05e-01 95.9% 94.7%
5000282 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 47.0 4.31e-01 100.0% 65.7%
3718570 101.1.10.9 alpha arrays › HTH › HTH › Cyclin-like › Cyclin 0.58 42.0 3.59e-01 78.1% 45.6%
3398316 101.1.2.248 alpha arrays › HTH › HTH › winged helix domain › DUF4777 0.58 46.0 4.34e-01 84.9% 82.4%
3968658 101.1.2.6 alpha arrays › HTH › HTH › winged helix domain › GntR 0.58 48.0 4.74e-01 100.0% 88.7%
4319187 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.57 43.0 4.22e-01 93.2% 72.9%
4971409 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 42.0 3.85e-01 94.5% 60.0%
3398923 101.1.2.248 alpha arrays › HTH › HTH › winged helix domain › DUF4777 0.57 44.0 4.32e-01 87.7% 83.7%
3966140 101.1.2.6 alpha arrays › HTH › HTH › winged helix domain › GntR 0.56 46.0 4.60e-01 97.3% 89.3%
3288783 101.1.2.6 alpha arrays › HTH › HTH › winged helix domain › GntR 0.56 47.0 4.51e-01 95.9% 84.7%
3976914 101.1.2.6 alpha arrays › HTH › HTH › winged helix domain › GntR 0.56 45.0 4.60e-01 90.4% 97.1%
4665743 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 41.0 3.70e-01 80.8% 60.0%
3513766 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.55 49.0 4.08e-01 98.6% 68.0%
3283702 101.1.2.6 alpha arrays › HTH › HTH › winged helix domain › GntR 0.55 46.0 4.50e-01 94.5% 86.3%
5077087 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 41.0 3.87e-01 98.6% 65.3%
3961674 101.1.2.6 alpha arrays › HTH › HTH › winged helix domain › GntR 0.54 43.0 4.33e-01 95.9% 88.0%
3349824 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.53 35.0 3.30e-01 76.7% 54.4%
1316682 101.1.2.233 alpha arrays › HTH › HTH › winged helix domain › NirdL-like_HTH 0.53 37.0 3.96e-01 84.9% 90.2%
4976235 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 41.0 3.77e-01 95.9% 64.0%
4982401 2006.1.1.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.53 40.0 2.87e-01 84.9% 49.0%
3279148 101.1.2.6 alpha arrays › HTH › HTH › winged helix domain › GntR 0.52 43.0 4.22e-01 98.6% 85.0%
3382967 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 43.0 3.02e-01 100.0% 27.6%
4929490 621.1.1.0 alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain 0.52 38.0 3.56e-01 78.1% 89.5%
3473498 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 43.0 4.13e-01 93.2% 81.2%
4453100 101.1.2.6 alpha arrays › HTH › HTH › winged helix domain › GntR 0.51 42.0 4.13e-01 100.0% 85.9%
3970042 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 42.0 4.29e-01 100.0% 97.1%