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IMGVR_UViG_2617271222_000001-2617271222-2619159602

Arc-Vir

IMGVR_UViG_2617271222_000001-2617271222-2619159602

Identity

Kingdom:
archaea

Quality

88.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-42
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vfrA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.69 47.0 3.39e-01 73.8% 31.5%
1j5yA02 3.30.1340.20 Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › 3H domain 0.63 43.0 3.29e-01 73.8% 49.5%
3mmlE02 2.40.100.10 Mainly Beta › Beta Barrel › Cyclophilin › Cyclophilin-like 0.62 48.0 3.60e-01 92.9% 53.3%
5ja1B00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.61 46.0 4.09e-01 85.7% 63.6%
1oypA01 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.59 43.0 2.79e-01 81.0% 76.2%
1wbaA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.58 46.0 3.20e-01 97.6% 52.6%
1wi0A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 38.0 2.97e-01 73.8% 48.7%
6sjqA00 3.10.20.650 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.54 36.0 2.82e-01 73.8% 28.7%
1zx8A01 2.40.100.20 Mainly Beta › Beta Barrel › Cyclophilin › 0.54 41.0 3.20e-01 100.0% 75.2%
3d4rE01 2.40.128.400 Mainly Beta › Beta Barrel › Lipocalin › 0.52 36.0 3.02e-01 73.8% 36.9%
2r7eB03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 35.0 2.49e-01 73.8% 34.8%
1kk1A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 41.0 2.79e-01 100.0% 30.1%
2orzA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 35.0 2.45e-01 73.8% 34.0%
3vx8A01 3.40.140.100 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Ubiquitin-like modifier-activating enzyme ATG7 C-terminal domain 0.50 40.0 2.92e-01 100.0% 41.1%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4964347 904.1.1.55 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › PF26046 0.83 70.0 6.87e-01 92.9% 97.8%
4990784 375.1.1.323 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Arc_trans_TRASH 0.75 55.0 5.93e-01 78.6% 97.1%
3362593 379.1.1.0 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.73 59.0 4.40e-01 92.9% 74.3%
4000496 6171.1.1.0 ↗ alpha bundles › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases 0.66 56.0 3.61e-01 100.0% 22.5%
3509315 6171.1.1.0 ↗ alpha bundles › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases 0.65 53.0 3.73e-01 100.0% 31.0%
None — 0.64 53.0 3.65e-01 100.0% 28.5%
3178301 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.64 52.0 4.10e-01 100.0% 49.0%
3504555 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.63 45.0 3.82e-01 81.0% 46.3%
3519254 6171.1.1.0 ↗ alpha bundles › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases 0.63 53.0 3.53e-01 100.0% 26.1%
5031930 375.8.1.0 ↗ few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta 0.63 46.0 4.69e-01 81.0% 95.0%
3271906 377.1.1.4 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › GATA 0.63 46.0 4.25e-01 83.3% 67.8%
3787741 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.63 52.0 4.74e-01 100.0% 73.3%
2476674 376.1.1.27 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.60 48.0 3.93e-01 100.0% 85.9%
3397204 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.58 49.0 3.82e-01 100.0% 61.0%
3494052 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.57 40.0 4.01e-01 81.0% 77.8%
3904649 12.5.1.2 ↗ beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › GPS 0.55 46.0 3.08e-01 100.0% 31.1%
4025192 4988.1.1.0 ↗ a+b two layers › Ribosomal protein S8, C-terminal domain › Ribosomal protein S8, C-terminal domain › Ribosomal protein S8, C-terminal domain 0.55 37.0 3.35e-01 76.2% 46.0%
4946461 2004.1.1.19 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.53 42.0 2.78e-01 100.0% 37.2%
3562433 10.32.1.2 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C 0.52 36.0 2.46e-01 73.8% 32.4%
4028215 109.4.1.2417 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Importin_rep_6, TPR_IPO5 0.51 39.0 2.21e-01 92.9% 16.7%
3389712 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.50 36.0 2.65e-01 78.6% 61.5%
4679376 377.1.1.11 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › RecO_C 0.50 38.0 2.64e-01 85.7% 24.0%