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IMGVR_UViG_2619619116_000001-2619619116-2620725316

Arc-Vir

IMGVR_UViG_2619619116_000001-2619619116-2620725316

Identity

Kingdom:
archaea

Quality

86.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-60
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5aa7A00 2.70.50.50 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › chitin-binding protein cbp21 0.69 53.0 4.01e-01 94.7% 33.8%
3esmA00 2.60.40.2230 Mainly Beta › Sandwich › Immunoglobulin-like › Uncharacterised protein YcnI-like PF07987, DUF1775 0.56 46.0 3.63e-01 100.0% 57.2%
1dhkB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 46.0 3.30e-01 100.0% 37.4%
2pn5A05 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.55 41.0 3.66e-01 100.0% 52.1%
3nmeA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 40.0 3.51e-01 98.2% 52.7%
2nncA00 2.60.40.2470 Mainly Beta › Sandwich › Immunoglobulin-like › SoxY domain 0.53 40.0 3.39e-01 100.0% 45.5%
1xvsA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.53 41.0 3.45e-01 96.5% 53.7%
4ofkB00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 41.0 3.51e-01 100.0% 50.0%
3o4lD01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 43.0 3.72e-01 100.0% 63.5%
1cl7I00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 41.0 3.74e-01 100.0% 63.4%
3thdA03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 44.0 3.46e-01 100.0% 51.1%
5jtwB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 44.0 3.70e-01 100.0% 53.8%
2f68X01 2.60.40.1280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 42.0 3.38e-01 100.0% 62.3%
4lm6A00 3.90.510.10 Alpha Beta › Alpha-Beta Complex › Cryptophytan Phycoerythrin (Alpha-1 Chain); Chain A › Phycoerythrin alpha chain 0.51 34.0 3.41e-01 100.0% 64.5%
1fp5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 40.0 3.52e-01 96.5% 89.0%
4liqE05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 41.0 3.55e-01 96.5% 91.0%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4325827 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 52.0 4.39e-01 98.2% 56.2%
3501392 11.1.1.45 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Sec63 0.62 51.0 4.38e-01 100.0% 64.8%
3937422 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.59 49.0 3.33e-01 96.5% 70.2%
4971063 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.57 49.0 4.09e-01 100.0% 79.0%
3740309 11.1.8.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Ctag/Cox11 (Pfam 04442) › CtaG_Cox11 0.56 46.0 3.69e-01 100.0% 74.1%
3599242 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 47.0 3.87e-01 100.0% 53.0%
3525765 6055.1.1.14 extended segments › Preprotein translocase subunit YajC › Preprotein translocase subunit YajC › Preprotein translocase subunit YajC › CtaG_Cox11 0.55 45.0 3.69e-01 100.0% 78.4%
4124871 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 47.0 3.74e-01 100.0% 66.1%
3274281 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 46.0 3.61e-01 96.5% 99.2%
3831331 2002.1.1.423 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › CtaG_Cox11 0.55 46.0 3.78e-01 100.0% 53.0%
3415432 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 42.0 3.43e-01 100.0% 60.7%
3972362 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 44.0 3.55e-01 100.0% 78.4%
3174592 4991.1.1.91 extended segments › Lag-3 N-terminal region › Lag-3 N-terminal region › Lag-3 N-terminal region › CtaG_Cox11 0.53 43.0 3.61e-01 100.0% 53.0%
3404272 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.52 39.0 2.93e-01 84.2% 46.9%
3625048 304.127.1.0 a+b two layers › Alpha-beta plaits › Notch heterodimerization domain › Notch heterodimerization domain 0.52 40.0 3.26e-01 100.0% 59.3%
3921458 7.1.1.1 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ 0.52 42.0 3.58e-01 96.5% 82.9%
3395348 11.1.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin 0.51 40.0 3.53e-01 100.0% 82.9%
4335619 11.1.1.845 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CtaG_Cox11 0.51 39.0 3.28e-01 98.2% 80.0%
D2 high residues 63-138
PDB
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3vsvA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.87 81.0 6.67e-01 100.0% 98.4%
4amwA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.71 62.0 5.01e-01 98.7% 60.1%
2q6iA02 2.40.30.90 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like 0.68 59.0 5.42e-01 100.0% 90.3%
2cw5A02 2.40.30.90 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like 0.68 58.0 5.59e-01 98.7% 92.1%
2zbvC02 2.40.30.90 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like 0.67 58.0 5.30e-01 98.7% 92.2%
1g0dA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 60.0 4.88e-01 98.7% 78.1%
4ba0A04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.66 60.0 4.76e-01 100.0% 56.4%
4uzgA01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.66 59.0 4.68e-01 100.0% 63.5%
5uv8A01 2.60.40.3850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.65 44.0 4.66e-01 96.1% 79.1%
2f4nB02 2.40.30.90 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like 0.65 55.0 5.18e-01 96.1% 96.8%
5e7gA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 54.0 5.23e-01 98.7% 83.1%
7o85C01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 44.0 4.39e-01 77.6% 100.0%
2v5mA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 51.0 4.65e-01 100.0% 75.0%
7lfbH01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 50.0 4.41e-01 98.7% 81.2%
2y23A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 49.0 4.43e-01 96.1% 69.2%
3fawA01 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 48.0 4.59e-01 98.7% 78.3%
5whzH02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 50.0 4.30e-01 98.7% 76.4%
6c98A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 48.0 4.61e-01 96.1% 81.3%
3gm8A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 43.0 4.36e-01 96.1% 80.8%
1fvqA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 44.0 4.50e-01 85.5% 87.5%
3cmgA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 44.0 4.26e-01 98.7% 74.7%
1kxqE00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 48.0 4.22e-01 98.7% 80.0%
1tvdA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 48.0 4.23e-01 98.7% 81.0%
1zx8A01 2.40.100.20 Mainly Beta › Beta Barrel › Cyclophilin › 0.55 48.0 4.13e-01 98.7% 73.6%
3kptA02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 48.0 4.00e-01 100.0% 53.9%
2zbiA02 3.30.70.2120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 43.0 3.85e-01 84.2% 84.4%
7esdB01 2.60.40.350 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 49.0 4.60e-01 100.0% 83.7%
1c16A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 46.0 4.29e-01 96.1% 77.3%
3v6oB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 47.0 4.38e-01 100.0% 80.0%
5f7uA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 37.0 3.75e-01 100.0% 71.1%
1n26A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 47.0 4.27e-01 100.0% 80.4%
3irpX01 2.60.40.1280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 47.0 3.82e-01 100.0% 53.9%
7y6oA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 46.0 4.43e-01 98.7% 84.4%
4h8wC02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 40.0 4.10e-01 96.1% 82.7%
2khaA01 2.60.40.2140 Mainly Beta › Sandwich › Immunoglobulin-like › Beta-1,3-glucan-recognition protein, N-terminal domain 0.53 45.0 4.14e-01 96.1% 73.3%
1n67A01 2.60.40.1280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 46.0 3.81e-01 100.0% 53.9%
4uozA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 33.0 3.49e-01 100.0% 74.2%
2axwA01 2.60.40.1570 Mainly Beta › Sandwich › Immunoglobulin-like › Dr adhesin 0.52 44.0 3.88e-01 98.7% 98.3%
4liqE04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 42.0 3.97e-01 96.1% 73.5%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2606543 11.42.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › beta-xylosidase (XylC) insertion domain › beta-xylosidase (XylC) insertion domain › GH141_M 0.85 79.0 5.79e-01 100.0% 100.0%
3815787 12.3.1.41 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Raffinose_syn 0.73 55.0 5.41e-01 98.7% 75.0%
3673946 12.1.1.63 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Raffinose_syn 0.73 59.0 5.75e-01 100.0% 78.3%
4950006 11.1.1.33 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arch_flagellin 0.73 66.0 5.43e-01 100.0% 83.0%
3251723 10.32.1.201 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CEMIP_X 0.71 65.0 4.86e-01 100.0% 55.6%
1569631 4178.1.1.0 beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain 0.70 62.0 4.88e-01 98.7% 55.6%
4973676 1.1.4.1 beta barrels › cradle loop barrel › RIFT-related › Bacterial fluorinating enzyme-C › SAM_HAT_C 0.69 60.0 5.51e-01 98.7% 90.0%
4290860 323.1.1.0 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.68 54.0 3.93e-01 85.5% 73.3%
4995158 1.1.4.1 beta barrels › cradle loop barrel › RIFT-related › Bacterial fluorinating enzyme-C › SAM_HAT_C 0.68 60.0 5.62e-01 100.0% 96.8%
5006286 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.68 46.0 4.92e-01 100.0% 83.1%
4986214 1.1.4.1 beta barrels › cradle loop barrel › RIFT-related › Bacterial fluorinating enzyme-C › SAM_HAT_C 0.67 58.0 5.48e-01 100.0% 92.6%
1498248 4178.1.1.1 beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › DUF5110 0.66 60.0 4.76e-01 100.0% 56.4%
4996262 1.1.4.1 beta barrels › cradle loop barrel › RIFT-related › Bacterial fluorinating enzyme-C › SAM_HAT_C 0.66 57.0 5.21e-01 100.0% 90.5%
3174046 2003.1.5.6 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltr_RsmB-F 0.65 50.0 3.22e-01 82.9% 18.9%
2669379 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.65 58.0 4.21e-01 100.0% 37.7%
3366240 12.1.1.63 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Raffinose_syn 0.63 56.0 5.04e-01 96.1% 84.3%
3274336 11.1.1.793 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7743 0.59 51.0 4.61e-01 100.0% 71.4%
3895575 11.1.1.99 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.58 48.0 4.35e-01 94.7% 85.5%
None 0.58 48.0 3.16e-01 90.8% 42.5%
5012700 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.58 48.0 4.62e-01 90.8% 82.4%
3468263 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.57 48.0 3.06e-01 92.1% 36.8%
3562013 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 49.0 4.61e-01 98.7% 100.0%
3257478 3156.1.1.27 beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › PF26737 0.57 45.0 4.41e-01 98.7% 77.6%
3412464 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 48.0 4.42e-01 98.7% 81.9%
2724451 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 47.0 4.18e-01 94.7% 82.3%
3676867 206.1.1.74 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, PK_Tyr_Ser-Thr 0.56 47.0 3.04e-01 92.1% 41.7%
3829482 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.56 47.0 3.14e-01 93.4% 45.9%
4629020 11.1.5.85 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › PFF1_C 0.56 47.0 3.68e-01 96.1% 85.1%
3430344 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.56 45.0 2.88e-01 89.5% 34.7%
3263969 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 48.0 4.40e-01 100.0% 72.4%
4025735 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.54 48.0 4.35e-01 100.0% 81.9%
3367119 207.1.1.95 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14 0.54 41.0 2.67e-01 81.6% 35.8%
3887881 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 46.0 4.57e-01 97.4% 100.0%
3746253 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 46.0 4.53e-01 100.0% 98.8%
None 0.52 43.0 2.63e-01 94.7% 26.2%
3640708 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 43.0 3.91e-01 96.1% 71.8%
3292650 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 42.0 2.78e-01 90.8% 39.4%
3655555 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.51 43.0 2.88e-01 96.1% 42.4%
3176571 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 44.0 4.09e-01 96.1% 83.2%
3786386 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 43.0 4.08e-01 96.1% 83.2%
3273980 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.50 42.0 3.75e-01 100.0% 95.8%