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IMGVR_UViG_2619619116_000001-2619619116-2620725327

Arc-Vir

IMGVR_UViG_2619619116_000001-2619619116-2620725327

Identity

Kingdom:
archaea

Quality

80.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-71
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3b21A00 3.90.70.140 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.78 72.0 4.98e-01 100.0% 67.2%
1e2tA03 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.76 53.0 4.33e-01 74.6% 81.2%
2j7qA00 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.73 65.0 4.40e-01 100.0% 75.3%
2jrbA00 3.30.250.20 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › L1 transposable element, C-terminal domain 0.72 51.0 5.07e-01 79.4% 72.3%
1mbmA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.68 40.0 3.84e-01 74.6% 50.0%
1ou5A01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.67 47.0 3.64e-01 74.6% 46.4%
3oajA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.65 53.0 4.13e-01 92.1% 79.9%
3f6zB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.65 46.0 4.33e-01 76.2% 97.5%
2iruA02 3.30.70.3300 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 56.0 4.40e-01 100.0% 84.1%
3wxmB02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.64 42.0 3.39e-01 100.0% 35.2%
1nkgA02 2.60.40.1120 Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain 0.63 38.0 3.49e-01 76.2% 43.5%
3ajvC02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.63 53.0 4.69e-01 93.7% 69.2%
2wdtC02 3.30.1490.420 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ubiquitin carboxyl-terminal hydrolase, domain 2 0.62 43.0 3.68e-01 73.0% 73.3%
3rlfF03 2.40.430.10 Mainly Beta › Beta Barrel › Periplasmic binding protein-like II › D-maltodextrin-binding protein, MBP 0.62 45.0 4.04e-01 77.8% 61.4%
2k2jA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 44.0 3.61e-01 76.2% 81.2%
1j0hA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 49.0 3.99e-01 90.5% 81.6%
3aa0B02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.60 45.0 3.47e-01 82.5% 67.1%
1eh7A01 3.30.160.70 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Methylated DNA-protein cysteine methyltransferase domain 0.60 35.0 3.45e-01 76.2% 51.4%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.60 46.0 3.50e-01 81.0% 44.5%
1cjxA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.60 48.0 3.79e-01 95.2% 81.3%
3fqmA01 2.20.25.210 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Hepatitis C NS5A, domain 1B 0.60 41.0 4.25e-01 74.6% 75.4%
3p26A03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.60 42.0 3.58e-01 76.2% 68.2%
3qijB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 43.0 3.87e-01 77.8% 77.5%
2z0lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.59 40.0 2.65e-01 71.4% 80.5%
1yzbA01 3.90.70.40 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.59 51.0 4.18e-01 100.0% 84.7%
3pvlA04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 43.0 3.70e-01 77.8% 79.8%
3k1lA01 3.30.457.40 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.58 40.0 3.69e-01 74.6% 59.8%
6bm0A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 48.0 2.98e-01 93.7% 40.8%
4q05A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.57 44.0 2.82e-01 84.1% 31.5%
1o70A01 2.30.180.10 Mainly Beta › Roll › FAS1 domain › FAS1 domain 0.57 41.0 3.26e-01 77.8% 46.4%
5h4eA02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.57 42.0 3.49e-01 81.0% 66.4%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 40.0 3.69e-01 76.2% 81.4%
1dbhA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 40.0 3.24e-01 76.2% 67.2%
5xpyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 39.0 3.30e-01 73.0% 63.9%
3cwvA01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.56 49.0 3.49e-01 100.0% 80.3%
4gzuB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 40.0 3.56e-01 76.2% 79.1%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 37.0 4.10e-01 74.6% 93.6%
1r89A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.53 43.0 3.60e-01 100.0% 90.6%
2yj6A02 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.53 38.0 3.44e-01 81.0% 61.1%
4nkbA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.52 43.0 3.70e-01 98.4% 75.4%
4pqdA00 3.90.570.10 Alpha Beta › Alpha-Beta Complex › Sugar Binding Protein, Amyloid A4 Protein; Chain A › Amyloidogenic glycoprotein, heparin-binding domain 0.52 36.0 3.18e-01 76.2% 82.9%
4ioyX02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 38.0 3.20e-01 82.5% 65.2%
1smpI00 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.51 38.0 3.38e-01 85.7% 66.0%
1p9rA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.50 43.0 3.67e-01 100.0% 90.1%
5umsA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 37.0 3.21e-01 81.0% 68.6%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4989442 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.91 84.0 5.85e-01 100.0% 45.7%
5033329 219.1.1.76 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF553 0.89 83.0 5.82e-01 100.0% 43.4%
4987387 219.1.1.76 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF553 0.88 82.0 5.65e-01 100.0% 38.9%
4955468 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.87 81.0 5.61e-01 100.0% 43.4%
5021112 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.87 80.0 5.53e-01 100.0% 40.5%
4952203 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.87 80.0 5.25e-01 100.0% 43.4%
4955823 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.86 79.0 5.14e-01 100.0% 48.8%
5022074 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.84 78.0 5.33e-01 100.0% 56.5%
3480227 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.82 72.0 4.93e-01 96.8% 49.8%
3500153 219.1.1.27 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Menin 0.80 71.0 4.96e-01 100.0% 36.2%
3484263 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.79 71.0 4.87e-01 100.0% 34.8%
3967714 241.1.1.6 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › YbjN 0.79 58.0 4.47e-01 79.4% 41.4%
3804711 219.1.1.113 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PF28979 0.78 71.0 4.62e-01 100.0% 86.7%
3952545 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.77 53.0 4.88e-01 71.4% 58.2%
3290662 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.77 69.0 5.40e-01 100.0% 94.6%
3604406 219.1.1.76 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF553 0.76 67.0 4.91e-01 100.0% 38.2%
4568123 219.1.1.79 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core2 0.74 66.0 4.75e-01 100.0% 45.1%
7413 219.1.1.24 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Herpes_teg_N 0.73 65.0 4.40e-01 100.0% 75.0%
3163931 219.1.1.79 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core2 0.72 62.0 4.70e-01 100.0% 49.0%
3823449 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.70 64.0 4.06e-01 100.0% 89.3%
3399870 219.1.1.24 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Herpes_teg_N 0.70 60.0 4.18e-01 100.0% 83.6%
4031301 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.68 48.0 4.56e-01 74.6% 72.0%
3397758 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.68 58.0 4.06e-01 100.0% 80.0%
3408015 219.1.1.24 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Herpes_teg_N 0.67 58.0 3.97e-01 100.0% 76.2%
3976843 9.11.1.1 ↗ beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like › MliC 0.66 48.0 4.32e-01 77.8% 88.8%
4177358 4947.1.1.1 ↗ a+b complex topology › barrel domain in MalF N-terminal region › barrel domain in MalF N-terminal region › barrel domain in MalF N-terminal region › MalF_P2 0.66 48.0 4.28e-01 77.8% 58.9%
3684527 221.1.5.3 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Chemotaxis inhibitory protein CHIPS › DUF7734 0.65 45.0 3.94e-01 76.2% 49.5%
4029401 219.1.1.14 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Josephin 0.62 55.0 3.96e-01 100.0% 77.3%
4610858 220.1.1.44 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › POB3_N 0.61 44.0 3.73e-01 76.2% 73.3%
3436173 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.60 51.0 3.34e-01 100.0% 97.1%
3983524 274.1.1.13 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › GspH 0.60 52.0 4.00e-01 100.0% 67.8%
3967126 274.1.1.13 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › GspH 0.59 51.0 3.99e-01 100.0% 59.3%
3301602 5.1.2.41 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › WD40_RFWD3 0.59 52.0 3.75e-01 100.0% 54.4%
3868717 220.1.1.173 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_CERK 0.58 41.0 3.39e-01 76.2% 80.8%
3640436 220.1.1.96 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF3292 0.58 41.0 3.09e-01 76.2% 67.5%
4338155 3268.1.1.2 ↗ a+b two layers › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase › BH1974-like_central 0.58 50.0 4.76e-01 100.0% 94.7%
4939583 512.1.1.2 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.57 48.0 3.56e-01 98.4% 68.9%
2712015 220.1.1.19 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.57 41.0 3.79e-01 76.2% 86.4%
3517650 214.1.1.10 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7145 0.57 39.0 3.32e-01 71.4% 90.0%
3171117 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.56 42.0 3.66e-01 79.4% 90.5%
4946362 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.56 50.0 3.55e-01 100.0% 55.3%
3511457 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 41.0 3.32e-01 79.4% 75.6%
5023930 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.54 39.0 3.62e-01 77.8% 65.9%
3743110 220.1.1.19 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.54 41.0 3.56e-01 85.7% 71.4%
3402001 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.54 39.0 3.53e-01 79.4% 83.3%
3558235 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.53 46.0 3.67e-01 100.0% 53.3%
3610569 2498.1.1.14 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M8 0.53 39.0 2.46e-01 84.1% 28.4%
3861007 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.53 40.0 3.04e-01 82.5% 65.0%
3848670 5.1.4.485 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, LLGL, Beta-prop_NOL10_N 0.53 45.0 2.84e-01 100.0% 36.8%
4323652 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.53 37.0 3.22e-01 76.2% 55.2%
4928368 247.1.1.1 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.52 38.0 2.53e-01 79.4% 99.3%
3408303 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.52 37.0 3.47e-01 76.2% 81.2%
3324429 239.3.1.1 ↗ beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin 0.52 43.0 3.41e-01 100.0% 82.0%
3668756 10.13.1.1 ↗ beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A › E1-E2_ATPase 0.52 38.0 2.68e-01 82.5% 35.7%
3837507 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.52 45.0 3.10e-01 98.4% 81.4%
4539117 220.1.1.19 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.51 39.0 3.05e-01 85.7% 55.3%
3790774 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 40.0 3.34e-01 90.5% 56.7%
3989004 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.51 44.0 2.85e-01 98.4% 32.6%
3360341 219.1.1.14 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Josephin 0.50 42.0 2.99e-01 95.2% 43.9%
4344687 220.1.1.19 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.50 39.0 3.37e-01 87.3% 80.0%