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IMGVR_UViG_2627854269_000001-2627854269-2630861732

Arc-Vir

Identity

Accession:: IMGVR_UViG_2627854269_000001-2627854269-2630861732 ↗
Kingdom:: archaea

Quality

87.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 311-469

PDB

Domain cluster: rep: IMGVR_UViG_3300006876_000060-3300006876-Ga0079217_1000011916__D27-184

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1oi0A00	3.40.140.10	Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2	0.69	42.0	5.10e-01	98.1%	90.7%
2qlcA00	3.40.140.10	Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2	0.62	47.0	5.28e-01	97.5%	99.2%
7pjjA02	2.60.120.260	Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like	0.55	34.0	3.67e-01	81.8%	72.9%
3k17A02	3.30.70.890	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain	0.54	30.0	3.17e-01	96.2%	57.9%
2x5pA00	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.53	27.0	3.35e-01	79.9%	76.0%
3irzA03	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.50	28.0	3.39e-01	92.5%	83.8%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5010296	2492.1.1.0 ↗	a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like	0.79	67.0	6.52e-01	99.4%	82.4%
4954709	2492.1.1.0 ↗	a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like	0.77	61.0	6.66e-01	91.2%	100.0%
4311623	2492.1.1.9 ↗	a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC	0.69	49.0	5.34e-01	98.1%	85.2%
5024075	2492.1.1.18 ↗	a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB	0.64	45.0	4.84e-01	98.1%	82.0%
3186351	2008.1.1.144 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF27653	0.64	35.0	3.73e-01	89.9%	60.7%
3231886	2492.1.1.1 ↗	a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1	0.62	46.0	4.99e-01	98.1%	92.3%
3962828	2492.1.1.1 ↗	a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1	0.61	47.0	4.84e-01	100.0%	84.7%
3595627	11.1.4.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like	0.59	30.0	3.77e-01	91.8%	81.1%
4956009	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.57	24.0	3.24e-01	89.3%	71.8%
5036137	10.7.1.0 ↗	beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070	0.53	27.0	3.71e-01	96.2%	96.2%
5026071	11.1.4.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like	0.52	24.0	3.32e-01	81.1%	88.0%
5041351	10.1.2.0 ↗	beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED)	0.50	31.0	3.43e-01	86.2%	77.5%

D2 medium residues 1-43_55-186

PDB

Domain cluster: representative

CATH (22)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4kb2A01	1.10.132.20	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor	0.76	36.0	4.57e-01	70.9%	73.4%
3wvoC02	1.10.132.100	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 ›	0.70	43.0	4.86e-01	94.3%	80.0%
2bl2A00	1.20.120.610	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › lithium bound rotor ring of v- atpase	0.63	40.0	4.22e-01	91.4%	69.2%
3oduB01	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.61	42.0	3.63e-01	92.6%	43.7%
7dluA01	1.10.287.1260	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.60	33.0	4.16e-01	72.6%	88.6%
1u8vB03	1.20.140.10	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3	0.60	35.0	3.28e-01	86.3%	45.5%
3ezhA00	1.20.120.960	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Histidine kinase NarX, sensor domain	0.60	31.0	3.68e-01	89.7%	72.8%
2pg0A03	1.20.140.10	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3	0.60	32.0	3.45e-01	82.3%	59.1%
1y4cA03	1.20.120.660	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain	0.59	29.0	3.53e-01	89.7%	69.0%
1siqA03	1.20.140.10	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3	0.58	31.0	3.32e-01	81.7%	57.4%
5zw7A03	1.20.140.10	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3	0.58	32.0	3.45e-01	83.4%	60.5%
5iduC03	1.20.140.10	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3	0.58	32.0	3.36e-01	84.0%	57.9%
1egdA03	1.20.140.10	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3	0.57	32.0	3.53e-01	84.0%	65.2%
2wbiB03	1.20.140.10	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3	0.57	33.0	3.43e-01	84.0%	59.5%
2ix5A03	1.20.140.10	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3	0.57	32.0	3.37e-01	84.0%	59.4%
1dkxA02	1.20.1270.10	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.56	26.0	3.71e-01	87.4%	93.8%
4u7cB04	3.30.1490.100	Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain	0.54	29.0	3.71e-01	85.7%	86.2%
1o5hA00	1.20.120.680	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Formiminotetrahydrofolate cyclodeaminase monomer, up-and-down helical bundle	0.54	35.0	3.40e-01	90.3%	57.0%
3m7gA02	1.10.8.1010	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 ›	0.53	28.0	3.59e-01	85.7%	91.6%
1dt9A01	3.30.960.10	Alpha Beta › 2-Layer Sandwich › Translation, Eukaryotic Peptide Chain Release Factor Subunit 1; Chain A › eRF1 domain 1	0.52	27.0	3.37e-01	82.3%	81.9%
7aalA01	1.20.1270.60	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain	0.51	44.0	3.78e-01	90.9%	82.7%
1dw9A02	3.30.1160.10	Alpha Beta › 2-Layer Sandwich › Cyanate Lyase; Chain: A, domain 2 › Cyanate lyase, C-terminal domain	0.50	22.0	3.23e-01	92.6%	98.5%

ECOD (22)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4024445	3871.1.1.1 ↗	alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN	0.72	50.0	5.57e-01	94.3%	88.6%
3264853	310.2.1.0 ↗	a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF	0.72	37.0	4.18e-01	70.9%	63.7%
4588350	3755.3.1.0 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin	0.68	36.0	3.89e-01	72.0%	58.7%
3678718	5041.1.1.1 ↗	extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C	0.65	40.0	4.93e-01	92.6%	100.0%
3737705	605.4.1.4 ↗	alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein › DUF202	0.63	35.0	4.58e-01	91.4%	97.0%
3936672	5001.1.1.0 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like	0.62	42.0	3.29e-01	92.0%	32.8%
3279601	174.1.1.0 ↗	few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain	0.62	38.0	3.86e-01	92.0%	60.6%
4369181	601.19.1.1 ↗	alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Apolipoprotein	0.61	49.0	3.93e-01	96.6%	43.2%
4628866	109.4.1.1873 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PigN	0.61	33.0	2.76e-01	89.1%	30.3%
3763198	5001.1.1.1 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1	0.60	43.0	3.41e-01	90.9%	36.3%
3185197	192.5.1.17 ↗	alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › DUF202	0.59	39.0	4.37e-01	98.9%	85.9%
4607154	192.29.1.0 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding)	0.58	41.0	4.56e-01	94.9%	92.6%
4022421	568.1.1.0 ↗	few secondary structure elements › p8-MTCP1-related › p8-MTCP1-related › p8-MTCP1-related	0.58	42.0	4.00e-01	73.7%	91.0%
3289520	633.6.1.1 ↗	alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA_dh_1	0.55	31.0	3.31e-01	83.4%	59.4%
3593287	192.29.1.0 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding)	0.55	36.0	4.12e-01	92.0%	88.5%
4600429	5069.1.3.1 ↗	alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › Sdh_cyt	0.54	32.0	3.85e-01	86.3%	86.7%
3839927	1151.1.1.0 ↗	alpha bundles › Helical membrane domain in lipooligosaccharide phosphoethanolamine transferase A › Helical membrane domain in lipooligosaccharide phosphoethanolamine transferase A › Helical membrane domain in lipooligosaccharide phosphoethanolamine transferase A	0.53	47.0	4.21e-01	93.7%	92.5%
5072826	878.1.1.0 ↗	a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677	0.53	28.0	3.85e-01	73.1%	100.0%
3894393	601.1.2.0 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608)	0.53	39.0	4.20e-01	74.9%	93.3%
4547067	601.19.1.32 ↗	alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › PRM1	0.51	46.0	4.30e-01	98.9%	77.3%
3273401	603.1.1.0 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins	0.51	37.0	3.57e-01	74.9%	67.3%
4221094	611.9.1.6 ↗	alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain › Ran-binding	0.51	36.0	4.11e-01	89.1%	96.9%

D3 medium residues 187-272

PDB

Domain cluster: representative

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3gaaB00	3.40.50.10900	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › PAC-like subunit	0.59	46.0	3.37e-01	84.9%	78.5%
3mnfA00	3.40.50.10900	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › PAC-like subunit	0.54	42.0	3.17e-01	86.0%	86.4%
3al8B02	3.30.1680.10	Alpha Beta › 2-Layer Sandwich › ligand-binding face of the semaphorins, domain 2 › ligand-binding face of the semaphorins, domain 2	0.54	22.0	3.25e-01	83.7%	93.9%
3lapA01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.52	36.0	3.93e-01	93.0%	91.2%
2o7iA03	3.10.105.10	Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3	0.52	42.0	3.15e-01	93.0%	92.5%
3lvuB00	3.10.105.10	Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3	0.51	41.0	3.05e-01	91.9%	94.9%
1ii2A03	3.90.228.20	Alpha Beta › Alpha-Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 3 ›	0.51	42.0	3.07e-01	93.0%	71.9%
2p5kA00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.51	34.0	3.86e-01	90.7%	95.2%
7atrA01	3.10.105.10	Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3	0.50	41.0	3.05e-01	93.0%	96.0%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3605841	4986.1.1.0 ↗	few secondary structure elements › Variant surface glycoprotein MITAT 1.2, VSG 221, C-terminal domain › Variant surface glycoprotein MITAT 1.2, VSG 221, C-terminal domain › Variant surface glycoprotein MITAT 1.2, VSG 221, C-terminal domain	0.58	27.0	3.66e-01	90.7%	92.5%
3480734	355.1.1.2 ↗	few secondary structure elements › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › PSI	0.57	22.0	3.42e-01	83.7%	100.0%
3633928	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.55	37.0	4.16e-01	95.3%	98.3%
4518801	101.1.2.112 ↗	alpha arrays › HTH › HTH › winged helix domain › FtsK_gamma	0.52	32.0	3.46e-01	94.2%	72.0%
3202105	2003.1.1.3 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short	0.52	42.0	2.92e-01	94.2%	80.3%
4934542	1.1.1.0 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease	0.51	32.0	3.24e-01	100.0%	62.4%
3702626	206.1.3.46 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_IQCH	0.50	34.0	2.57e-01	70.9%	82.4%