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IMGVR_UViG_2634166507_000001-2634166507-2635972857

Arc-Vir

IMGVR_UViG_2634166507_000001-2634166507-2635972857

Identity

Kingdom:
archaea

Quality

96.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-87
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14076.13 best DUF4258 30.4 5.40e-07 86.1% 80.3%
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3u97A00 3.10.450.530 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 0.73 57.0 5.96e-01 82.6% 94.8%
4pj2A00 2.40.128.460 Mainly Beta › Beta Barrel › Lipocalin › Periplasmic lysozyme inhibitor of I-type lysozyme 0.69 47.0 4.20e-01 70.9% 74.4%
4nehA01 2.130.10.130 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal 0.66 49.0 3.15e-01 77.9% 36.9%
4kc5C03 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.66 51.0 3.45e-01 81.4% 73.2%
4emoC00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 45.0 4.07e-01 72.1% 75.0%
2ec1A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 45.0 4.06e-01 72.1% 84.7%
7obmA01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.64 49.0 3.27e-01 81.4% 78.2%
2x0qA01 3.30.310.280 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.63 45.0 3.96e-01 75.6% 54.9%
1h6lA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.63 46.0 3.04e-01 76.7% 72.5%
3djwA00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.62 48.0 4.70e-01 82.6% 98.9%
3ozqA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.62 49.0 3.89e-01 83.7% 77.6%
3v8uA04 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.61 42.0 3.62e-01 70.9% 95.0%
2qiyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 47.0 4.02e-01 82.6% 78.4%
2h36X00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 46.0 4.27e-01 81.4% 86.1%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.60 43.0 3.57e-01 75.6% 79.2%
4l68A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 44.0 4.10e-01 80.2% 95.5%
4ifaA01 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.59 51.0 3.56e-01 95.3% 74.2%
1ud9A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.58 44.0 3.23e-01 81.4% 94.6%
2p4oA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.58 40.0 2.83e-01 72.1% 87.0%
6n9aB02 3.30.420.200 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.58 40.0 4.41e-01 80.2% 91.3%
3u0aA00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.57 43.0 3.08e-01 80.2% 80.1%
8aimG01 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.57 45.0 4.66e-01 87.2% 92.6%
1jrrA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.57 46.0 4.06e-01 86.0% 86.1%
2wxwA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.57 44.0 3.59e-01 82.6% 81.0%
2xepB01 3.10.450.280 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 42.0 3.85e-01 89.5% 59.6%
1nrfA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.56 46.0 3.32e-01 89.5% 93.5%
1vwxT01 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.56 32.0 3.14e-01 70.9% 48.5%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 37.0 3.80e-01 72.1% 70.2%
3eweA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 39.0 2.85e-01 74.4% 52.2%
2eenA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.55 49.0 3.91e-01 100.0% 57.6%
1jmoA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.55 44.0 3.65e-01 86.0% 82.7%
1iucA00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.54 40.0 2.82e-01 80.2% 85.6%
2v95A02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.54 43.0 3.79e-01 86.0% 80.6%
3a58A01 2.30.29.90 Mainly Beta › Roll › PH-domain like › 0.54 48.0 3.85e-01 100.0% 66.1%
3jcuO01 2.40.160.30 Mainly Beta › Beta Barrel › Porin › Photosystem II, cytochrome c-550 precursor 0.54 40.0 3.29e-01 81.4% 76.1%
3qhyA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 42.0 3.09e-01 89.5% 88.4%
3wa5B00 2.60.120.1690 Mainly Beta › Sandwich › Jelly Rolls › 0.52 41.0 3.70e-01 87.2% 81.5%
4esqA00 3.40.1000.70 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › PknH-like extracellular domain 0.52 43.0 3.32e-01 90.7% 74.2%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.51 37.0 4.05e-01 93.0% 94.4%
1rypL00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.51 38.0 3.01e-01 82.6% 88.7%
6bn3A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 42.0 3.08e-01 96.5% 87.3%
7z0sE02 1.10.645.10 Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B 0.50 38.0 2.65e-01 82.6% 89.9%
ECOD (75)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4942674 4312.1.1.15 a+b two layers › RelE-like › RelE-like › RelE-like › DUF4258 0.95 73.0 8.24e-01 80.2% 100.0%
5012352 4312.1.1.15 a+b two layers › RelE-like › RelE-like › RelE-like › DUF4258 0.95 86.0 8.67e-01 95.3% 95.3%
4993641 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.94 76.0 8.15e-01 83.7% 96.0%
3288266 4312.1.1.15 a+b two layers › RelE-like › RelE-like › RelE-like › DUF4258 0.92 64.0 7.45e-01 79.1% 96.8%
5071733 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.90 85.0 8.36e-01 100.0% 98.9%
4998648 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.88 68.0 6.57e-01 80.2% 85.3%
5016946 4312.1.1.22 a+b two layers › RelE-like › RelE-like › RelE-like › PF27370 0.85 67.0 6.58e-01 82.6% 80.0%
4992633 4312.1.1.15 a+b two layers › RelE-like › RelE-like › RelE-like › DUF4258 0.83 66.0 7.08e-01 84.9% 96.0%
4966527 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.79 72.0 7.10e-01 97.7% 92.2%
3956000 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.79 60.0 6.59e-01 82.6% 97.1%
4992459 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.77 58.0 6.31e-01 80.2% 100.0%
3955467 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.75 57.0 6.23e-01 82.6% 98.6%
4968133 4312.1.1.1 a+b two layers › RelE-like › RelE-like › RelE-like › BrnT_toxin 0.74 61.0 5.95e-01 88.4% 89.2%
3239417 234.3.1.0 a+b two layers › Microbial ribonucleases-like › Colicin D nuclease domain › Colicin D nuclease domain 0.74 61.0 5.20e-01 88.4% 87.4%
3287567 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.73 60.0 5.94e-01 88.4% 88.9%
1146563 4312.1.1.1 a+b two layers › RelE-like › RelE-like › RelE-like › BrnT_toxin 0.73 57.0 5.98e-01 82.6% 96.1%
5080833 4312.1.1.4 a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 0.72 60.0 5.65e-01 90.7% 83.8%
3480327 220.1.1.4 beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.72 51.0 4.46e-01 73.3% 92.0%
3948814 4312.1.1.4 a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 0.70 58.0 5.44e-01 90.7% 81.0%
3166135 4312.1.1.4 a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 0.69 59.0 5.70e-01 90.7% 86.3%
4995784 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 43.0 4.59e-01 70.9% 72.0%
3282412 4312.1.1.4 a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 0.68 60.0 5.30e-01 96.5% 80.5%
3917583 5.1.4.13 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP 0.68 51.0 3.20e-01 77.9% 34.4%
3586825 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.66 47.0 3.09e-01 73.3% 40.9%
3437699 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.66 47.0 3.36e-01 73.3% 36.3%
4950997 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.66 51.0 4.84e-01 86.0% 95.2%
3298472 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.65 46.0 3.65e-01 81.4% 37.1%
3490231 5.1.4.37 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.64 49.0 3.21e-01 80.2% 26.9%
3572892 5.1.4.13 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP 0.64 47.0 2.96e-01 77.9% 30.9%
3658750 220.1.1.78 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 0.64 44.0 3.90e-01 70.9% 77.6%
3601482 5.1.4.17 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A,MMS1_N 0.64 47.0 2.69e-01 77.9% 15.3%
3233720 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.63 47.0 3.16e-01 77.9% 71.6%
3989328 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.63 49.0 4.82e-01 83.7% 80.9%
3183643 243.9.1.4 a+b two layers › Cystatin-like › Nuclease A inhibitor (NuiA)-related › Nuclease A inhibitor (NuiA)-related › NuiA_2 0.62 49.0 4.38e-01 83.7% 100.0%
3476559 5.1.13.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › Propeller domain of DCAF15 › DCAF15_WD40 0.62 45.0 3.05e-01 77.9% 82.9%
3980680 3308.2.1.2 beta duplicates or obligate multimers › periplasmic lysozyme inhibitor of I-type lysozyme-like › XAC2610 protein › XAC2610 protein › PF27031 0.62 44.0 3.49e-01 74.4% 42.4%
3725729 243.9.1.4 a+b two layers › Cystatin-like › Nuclease A inhibitor (NuiA)-related › Nuclease A inhibitor (NuiA)-related › NuiA_2 0.61 48.0 4.25e-01 82.6% 100.0%
4026020 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 46.0 2.94e-01 77.9% 34.1%
3514791 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.61 54.0 3.47e-01 95.3% 89.6%
3890539 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.61 41.0 4.67e-01 75.6% 100.0%
3630840 5.1.3.10 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Phytase 0.61 46.0 3.05e-01 80.2% 38.6%
4011973 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.60 46.0 3.06e-01 81.4% 33.4%
3999383 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.60 45.0 2.99e-01 77.9% 27.6%
3290463 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.60 49.0 4.24e-01 89.5% 92.6%
430591 222.1.1.3 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › Acyl_CoA_thio 0.59 46.0 3.73e-01 81.4% 94.2%
4355548 558.1.1.26 alpha duplicates or obligate multimers › Lis-homology dimerization domain › Lis-homology dimerization domain › Lis-homology dimerization domain › WD40 0.59 44.0 2.79e-01 79.1% 15.1%
3645097 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.59 50.0 3.44e-01 97.7% 47.4%
3379658 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.58 48.0 3.12e-01 89.5% 81.8%
3941379 11.1.1.53 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DOMON 0.58 45.0 3.55e-01 83.7% 96.8%
4977450 325.1.6.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 0.58 47.0 3.72e-01 87.2% 72.6%
3306198 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.57 45.0 3.01e-01 86.0% 87.8%
3714628 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.57 47.0 3.36e-01 89.5% 76.1%
4952863 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.57 47.0 4.07e-01 89.5% 87.4%
5044451 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 44.0 4.57e-01 83.7% 92.5%
3282563 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.57 45.0 3.43e-01 87.2% 89.5%
3499988 5.1.4.327 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, WD40_MABP1-WDR62_2nd 0.57 47.0 2.73e-01 90.7% 48.7%
3741358 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 41.0 3.08e-01 79.1% 31.1%
3281834 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.56 44.0 3.83e-01 87.2% 85.7%
5028155 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.56 47.0 3.88e-01 91.9% 92.3%
3708283 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 38.0 3.88e-01 70.9% 85.9%
3618412 5.1.11.24 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › Beta-prop_Aladin 0.56 46.0 2.92e-01 89.5% 92.7%
3291529 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.55 46.0 4.31e-01 94.2% 89.8%
4636538 3264.1.1.0 0.55 41.0 3.45e-01 83.7% 44.4%
3805924 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.54 43.0 3.40e-01 86.0% 75.1%
1390080 220.1.1.32 beta barrels › PH domain-like › PH domain-like › PH domain-like › Sec3-PIP2_bind 0.54 48.0 3.78e-01 100.0% 62.2%
4943640 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 44.0 3.97e-01 98.8% 69.2%
4216529 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.52 39.0 2.66e-01 79.1% 93.4%
3834073 331.9.1.7 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › AP5B1_C 0.52 38.0 2.91e-01 76.7% 44.1%
3223629 331.15.1.0 a+b two layers › TBP-like › Anti-CRISPR protein AcrID1 › Anti-CRISPR protein AcrID1 0.52 39.0 4.00e-01 81.4% 100.0%
3486056 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 43.0 3.67e-01 96.5% 77.5%
3542090 331.9.1.7 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › AP5B1_C 0.51 36.0 3.34e-01 73.3% 60.9%
3710053 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 46.0 2.95e-01 100.0% 93.6%
3243860 331.15.1.4 a+b two layers › TBP-like › Anti-CRISPR protein AcrID1 › Anti-CRISPR protein AcrID1 › FTH 0.51 38.0 3.17e-01 80.2% 70.3%
4229467 331.9.1.7 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › AP5B1_C 0.50 35.0 3.23e-01 73.3% 56.5%
2184 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.50 43.0 2.95e-01 94.2% 96.4%