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IMGVR_UViG_2634166507_000001-2634166507-2635972867

Arc-Vir

IMGVR_UViG_2634166507_000001-2634166507-2635972867

Identity

Kingdom:
archaea

Quality

91.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-89
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3zqsA02 3.10.110.20 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › RWD domain-like 0.64 48.0 4.69e-01 100.0% 72.4%
1dqeA00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.60 49.0 4.31e-01 92.0% 98.5%
2wcjA00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.60 50.0 4.32e-01 93.1% 92.9%
2yz0A00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.59 49.0 4.29e-01 94.3% 60.9%
1qexA03 2.60.40.1680 Mainly Beta › Sandwich › Immunoglobulin-like › 4-oxalocrotonate tautomerase-like 0.58 47.0 4.30e-01 100.0% 66.7%
2w4sA00 1.10.10.1440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PHAX RNA-binding domain 0.57 44.0 4.48e-01 82.8% 90.7%
1vhsA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 40.0 3.28e-01 74.7% 43.6%
8ex5A02 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.56 45.0 3.37e-01 87.4% 83.8%
4dy0B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.55 37.0 3.25e-01 100.0% 46.1%
3ld2B00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 38.0 3.16e-01 73.6% 40.1%
2xqyA01 3.30.500.50 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.55 48.0 3.86e-01 100.0% 90.4%
2imhA01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.55 43.0 3.31e-01 87.4% 51.2%
4dvgB00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.54 38.0 2.64e-01 73.6% 31.8%
4gc0A01 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.53 43.0 3.13e-01 87.4% 81.1%
1q48A00 3.90.1010.10 Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › 0.53 46.0 4.07e-01 100.0% 67.2%
8b4hA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.53 38.0 3.16e-01 74.7% 99.4%
7e4mA01 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.53 39.0 2.81e-01 87.4% 25.9%
4jxqA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 39.0 3.11e-01 79.3% 64.7%
3lmlA01 3.10.450.690 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 38.0 3.39e-01 87.4% 56.2%
2f96A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 41.0 3.19e-01 89.7% 98.5%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3503102 216.1.1.10 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › FANCL_d3 0.64 49.0 4.48e-01 98.9% 62.6%
3417970 216.1.1.10 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › FANCL_d3 0.62 48.0 4.52e-01 98.9% 68.6%
3712602 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.62 51.0 4.42e-01 94.3% 57.8%
2822545 101.1.8.3 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Topoisom_I,Topo_C_assoc 0.61 35.0 4.16e-01 83.9% 86.0%
3652038 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.59 34.0 3.48e-01 96.6% 57.6%
4028705 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.58 47.0 4.33e-01 92.0% 70.0%
3332438 524.1.1.1 ↗ alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p › RabGAP-TBC 0.58 40.0 3.43e-01 95.4% 42.0%
3487450 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.58 48.0 4.14e-01 94.3% 64.8%
3723442 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.58 47.0 4.23e-01 95.4% 62.3%
3482965 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.57 47.0 4.22e-01 94.3% 82.3%
3399255 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.57 46.0 4.27e-01 92.0% 82.6%
3265334 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.56 48.0 4.48e-01 95.4% 77.3%
3633470 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.56 47.0 4.14e-01 92.0% 86.8%
3510355 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.56 47.0 4.30e-01 95.4% 71.7%
3954177 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.55 27.0 3.01e-01 83.9% 55.4%
4028798 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.55 47.0 3.86e-01 95.4% 72.1%
3237854 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.54 45.0 4.16e-01 94.3% 73.0%
4944318 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 44.0 3.74e-01 88.5% 95.8%
3788566 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.53 45.0 3.81e-01 94.3% 66.7%
3976796 244.3.1.5 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › GutM 0.52 41.0 3.98e-01 100.0% 76.8%
3637624 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.52 42.0 3.85e-01 94.3% 66.7%
4015038 7516.1.1.0 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases 0.52 47.0 2.80e-01 100.0% 13.7%
5078375 210.1.5.1 ↗ a+b four layers › Ntn/PP2C › Ntn › SPO2555-like › DUF1028 0.51 41.0 3.23e-01 92.0% 53.2%
3469449 2484.1.1.149 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Plant_tran 0.50 40.0 3.09e-01 88.5% 94.8%