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IMGVR_UViG_2634166831_000001-2634166831-2636328335
Arc-VirIMGVR_UViG_2634166831_000001-2634166831-2636328335
Identity
- Kingdom:
- archaea
Quality
63.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-68
D2
medium
residues 69-133
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4g3vA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.72 | 57.0 | 4.23e-01 | 86.2% | 42.6% |
| 3djbA01 | 1.10.472.50 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like | 0.64 | 45.0 | 3.99e-01 | 73.8% | 68.8% |
| 2vk9A04 | 1.10.274.80 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › | 0.63 | 43.0 | 3.72e-01 | 70.8% | 52.9% |
| 2i53A02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.63 | 43.0 | 3.66e-01 | 72.3% | 67.6% |
| 2lm4A01 | 1.10.150.250 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Flavinator of succinate dehydrogenase | 0.61 | 44.0 | 3.97e-01 | 76.9% | 98.9% |
| 3nyjA00 | 1.20.120.770 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Amyloid precursor protein, E2 domain | 0.60 | 43.0 | 3.14e-01 | 75.4% | 49.2% |
| 1j8yF01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.60 | 44.0 | 4.01e-01 | 76.9% | 66.3% |
| 3ke6B01 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.59 | 43.0 | 3.06e-01 | 80.0% | 43.4% |
| 1h6gA02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.59 | 42.0 | 3.45e-01 | 75.4% | 68.5% |
| 2l1lB00 | 1.20.1440.250 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.59 | 45.0 | 3.67e-01 | 84.6% | 89.0% |
| 2glzA00 | 3.30.1330.130 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › | 0.58 | 39.0 | 3.01e-01 | 70.8% | 47.7% |
| 5h5mA02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.57 | 41.0 | 3.27e-01 | 75.4% | 64.6% |
| 4rg9B01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.57 | 40.0 | 2.99e-01 | 73.8% | 28.7% |
| 4wz9A02 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.56 | 40.0 | 2.80e-01 | 80.0% | 65.7% |
| 5dicA00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.55 | 38.0 | 3.28e-01 | 73.8% | 90.4% |
| 3di1A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.54 | 37.0 | 2.44e-01 | 72.3% | 37.9% |
| 2b99C00 | 3.40.50.960 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Lumazine/riboflavin synthase | 0.53 | 40.0 | 3.14e-01 | 84.6% | 84.2% |
| 1fnnB03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 35.0 | 3.09e-01 | 73.8% | 74.8% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3948171 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.79 | 58.0 | 4.75e-01 | 76.9% | 75.5% |
| 3457692 | 3419.1.1.0 ↗ | alpha bundles › Antitoxin VbhA › Antitoxin VbhA › Antitoxin VbhA | 0.77 | 56.0 | 6.28e-01 | 76.9% | 100.0% |
| 1007431 | 223.1.1.3 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF | 0.72 | 57.0 | 4.23e-01 | 86.2% | 42.6% |
| 3470998 | 3718.1.1.2 ↗ | alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT › NAD4L | 0.69 | 48.0 | 4.60e-01 | 72.3% | 89.3% |
| 4570660 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.68 | 51.0 | 3.91e-01 | 80.0% | 49.7% |
| 4974091 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.67 | 47.0 | 4.61e-01 | 76.9% | 68.6% |
| 4567807 | 397.7.1.6 ↗ | few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 › PF29718 | 0.66 | 49.0 | 4.98e-01 | 80.0% | 100.0% |
| 4931893 | 3843.1.1.4 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › PhaG_MnhG_YufB | 0.64 | 47.0 | 4.11e-01 | 80.0% | 80.0% |
| 3291667 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.62 | 48.0 | 3.77e-01 | 87.7% | 92.7% |
| 4605697 | 516.1.1.1 ↗ | alpha arrays › YgfY-like (DUP399, Pfam03937) › YgfY-like (DUP399, Pfam03937) › YgfY-like (DUP399, Pfam03937) › Sdh5 | 0.60 | 41.0 | 3.84e-01 | 72.3% | 100.0% |
| 3960393 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.52 | 42.0 | 3.40e-01 | 87.7% | 100.0% |