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IMGVR_UViG_2636415715_000001-2636415715-2637701490

Arc-Vir

IMGVR_UViG_2636415715_000001-2636415715-2637701490

Identity

Kingdom:
archaea

Quality

62.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-112
PDB
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2nlvA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.72 39.0 3.82e-01 71.7% 49.1%
1sc6A03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.71 37.0 4.17e-01 86.8% 64.6%
3uebF00 3.30.300.100 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like 0.70 49.0 5.07e-01 89.6% 76.0%
6etzA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.70 35.0 3.92e-01 90.6% 60.7%
1vx7X00 3.30.1360.210 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.67 37.0 3.88e-01 77.4% 58.8%
2x3gA00 3.30.70.1910 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 38.0 3.69e-01 87.7% 50.9%
2ifxA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 37.0 4.00e-01 86.8% 64.8%
2zbcA01 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.66 32.0 3.75e-01 84.0% 65.8%
1sjrA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.65 35.0 3.54e-01 87.7% 50.9%
2m9kA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.65 34.0 3.65e-01 86.8% 57.0%
1r89A03 3.30.70.590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Poly(A) polymerase predicted RNA binding domain 0.64 40.0 3.70e-01 86.8% 48.5%
2b4vA03 3.30.70.1970 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 34.0 3.54e-01 85.8% 54.5%
4c2mA09 3.30.70.2850 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 56.0 4.75e-01 97.2% 86.8%
4g59C01 2.60.40.2920 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 40.0 4.13e-01 97.2% 67.0%
5zi7A04 2.60.40.1840 Mainly Beta › Sandwich › Immunoglobulin-like › Aminopeptidase N, middle-beta domain 0.62 37.0 4.11e-01 94.3% 73.6%
1tuwA00 3.30.70.1090 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel. 0.59 35.0 3.51e-01 87.7% 56.6%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.58 48.0 5.20e-01 90.6% 100.0%
7zqiA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 35.0 3.86e-01 93.4% 75.6%
4nohA01 3.30.70.3060 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 30.0 3.47e-01 87.7% 70.4%
4af3A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 36.0 3.96e-01 87.7% 77.3%
2e29A01 3.30.70.2280 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 32.0 3.67e-01 86.8% 75.0%
4djbA00 3.30.70.2870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Mastadenovirus E4 ORF3 0.56 44.0 4.28e-01 83.0% 100.0%
6ea2A04 2.60.40.1840 Mainly Beta › Sandwich › Immunoglobulin-like › Aminopeptidase N, middle-beta domain 0.56 40.0 4.16e-01 97.2% 81.2%
5mmjh01 3.30.1370.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.56 37.0 4.23e-01 96.2% 94.7%
2grvA02 3.90.76.10 Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 0.56 39.0 3.91e-01 94.3% 69.0%
1v4pC01 3.30.980.10 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 0.56 40.0 4.02e-01 96.2% 74.1%
1x19A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 37.0 3.21e-01 89.6% 45.0%
1xdxA01 3.30.1140.40 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Tctex-1 0.55 39.0 4.06e-01 95.3% 79.0%
4yzgA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.55 43.0 3.13e-01 84.0% 68.4%
3b34A04 2.60.40.1840 Mainly Beta › Sandwich › Immunoglobulin-like › Aminopeptidase N, middle-beta domain 0.55 41.0 4.17e-01 97.2% 82.4%
2o30A00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 38.0 4.18e-01 95.3% 92.7%
2x8kA01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.53 42.0 4.27e-01 97.2% 86.7%
1bccB01 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.53 39.0 3.20e-01 93.4% 40.0%
2gcuA01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.53 39.0 3.03e-01 77.4% 97.5%
3l4jA04 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.52 38.0 3.91e-01 96.2% 78.4%
3f62A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 47.0 4.70e-01 100.0% 96.3%
5xuhA00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.52 41.0 3.88e-01 83.0% 99.2%
4cvuA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 37.0 3.67e-01 98.1% 69.8%
4rzkA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 38.0 4.20e-01 94.3% 94.3%
7kjhC01 2.60.40.2860 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 39.0 3.77e-01 96.2% 69.4%
5xyiY00 3.30.70.3370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 37.0 3.73e-01 92.5% 75.2%
2xcmC00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 38.0 4.04e-01 94.3% 90.2%
3kxyJ00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.51 34.0 3.29e-01 94.3% 56.6%
1qe0A01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.51 43.0 3.10e-01 90.6% 64.9%
2wasA00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.51 39.0 3.89e-01 82.1% 100.0%
2nvmA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.51 34.0 3.52e-01 76.4% 70.2%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.51 44.0 3.79e-01 94.3% 96.4%
4fpwB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.50 43.0 3.78e-01 95.3% 73.3%
1vi7A01 3.30.230.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › Impact, N-terminal domain 0.50 43.0 3.98e-01 93.4% 73.3%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4930688 330.2.1.4 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › DUF2113 0.77 43.0 4.40e-01 92.5% 56.2%
3441274 304.8.1.47 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_ACR9_3rd 0.72 42.0 3.96e-01 89.6% 48.8%
3588197 304.8.1.8 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 0.71 37.0 4.13e-01 86.8% 62.4%
136944 304.8.1.22 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › AHAS-like_ACT 0.71 37.0 4.05e-01 86.8% 61.2%
4959923 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.70 33.0 3.95e-01 80.2% 65.7%
4390550 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.70 45.0 4.55e-01 98.1% 65.7%
3602746 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.69 38.0 4.28e-01 86.8% 70.0%
3683648 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.69 37.0 3.78e-01 89.6% 52.4%
3932148 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.69 34.0 3.76e-01 86.8% 57.6%
5039114 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.68 34.0 4.35e-01 88.7% 83.3%
5051000 304.8.1.4 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C 0.68 34.0 3.74e-01 83.0% 57.8%
3285929 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.68 43.0 4.62e-01 97.2% 74.4%
5023619 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.68 35.0 4.09e-01 85.8% 69.3%
4247396 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.68 45.0 3.83e-01 99.1% 42.4%
3335686 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.68 36.0 3.90e-01 88.7% 60.0%
5038508 304.8.1.4 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C 0.68 34.0 3.78e-01 86.8% 58.8%
3368757 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.68 44.0 4.66e-01 97.2% 73.7%
3620547 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.67 33.0 3.27e-01 83.0% 43.6%
5052687 304.8.1.4 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C 0.67 31.0 3.63e-01 83.0% 60.0%
3974782 304.28.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › ACR_tran 0.67 39.0 4.12e-01 86.8% 63.2%
3440764 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.67 36.0 3.57e-01 88.7% 49.1%
3276287 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.67 39.0 3.95e-01 89.6% 57.1%
3284662 304.4.1.4 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.67 37.0 4.04e-01 90.6% 64.4%
4545902 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.66 44.0 4.74e-01 96.2% 80.0%
3177315 304.8.1.93 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF29153 0.66 39.0 4.27e-01 88.7% 71.8%
4583308 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.66 44.0 3.76e-01 97.2% 42.9%
3955607 304.4.1.4 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.66 37.0 3.87e-01 86.8% 58.0%
4114421 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.65 44.0 4.47e-01 97.2% 69.5%
3597457 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 41.0 4.28e-01 90.6% 69.5%
3599334 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.65 35.0 3.60e-01 85.8% 53.0%
4500602 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.65 44.0 4.59e-01 97.2% 76.8%
3959682 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.64 39.0 4.58e-01 90.6% 86.7%
4298844 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.64 41.0 4.32e-01 96.2% 71.6%
3595913 317.1.1.0 a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase 0.64 38.0 3.17e-01 86.8% 33.5%
184476 304.9.1.32 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › Ret2_MD 0.64 35.0 3.70e-01 88.7% 59.1%
4623684 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.64 41.0 3.72e-01 92.5% 48.6%
4398167 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.64 43.0 4.67e-01 97.2% 83.0%
4977477 304.103.1.0 a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like 0.64 47.0 3.28e-01 93.4% 24.9%
4138832 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.64 43.0 4.64e-01 97.2% 82.0%
3281355 304.12.1.12 a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › GDH_ACT2 0.63 46.0 4.64e-01 100.0% 76.2%
3607364 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.62 34.0 3.32e-01 88.7% 47.8%
3699404 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.62 32.0 3.64e-01 84.9% 63.7%
4854269 304.4.1.7 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Cyclase_polyket 0.62 35.0 3.59e-01 79.2% 55.8%
3615120 375.1.1.207 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › FAZ1_cons 0.62 39.0 4.14e-01 90.6% 73.3%
3595804 304.55.2.0 a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like 0.62 39.0 4.07e-01 90.6% 69.5%
4500983 304.8.1.53 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › GlnD_5th 0.62 41.0 3.60e-01 99.1% 45.0%
3591694 304.55.2.8 a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like › FAZ1_cons 0.61 38.0 4.11e-01 90.6% 73.3%
3999603 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.61 33.0 3.38e-01 87.7% 52.0%
3258706 812.1.1.0 a+b duplicates or obligate multimers › MinE-like › Cell division protein MinE topological specificity domain › Cell division protein MinE topological specificity domain 0.61 48.0 4.44e-01 90.6% 66.7%
3272718 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.60 32.0 3.33e-01 84.0% 53.0%
4026972 304.5.1.0 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.60 34.0 3.52e-01 85.8% 57.1%
3895754 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 30.0 2.96e-01 90.6% 42.6%
3684865 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.60 32.0 3.25e-01 85.8% 51.4%
3720046 304.55.2.8 a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like › FAZ1_cons 0.60 38.0 3.94e-01 90.6% 69.5%
3665392 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.60 43.0 4.17e-01 99.1% 66.7%
3713464 375.1.1.207 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › FAZ1_cons 0.59 38.0 4.03e-01 88.7% 74.4%
3606910 375.1.1.207 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › FAZ1_cons 0.59 38.0 4.03e-01 89.6% 72.6%
3367405 304.8.1.45 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.58 39.0 3.92e-01 99.1% 66.4%
5040496 304.54.1.0 a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like 0.58 36.0 3.99e-01 95.3% 81.2%
4098715 304.4.1.7 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Cyclase_polyket 0.57 33.0 3.34e-01 90.6% 54.1%
3280191 304.4.1.7 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Cyclase_polyket 0.57 35.0 3.52e-01 89.6% 60.0%
5051424 304.4.1.3 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › YCII 0.57 35.0 3.66e-01 86.8% 67.4%
3961341 304.136.1.0 a+b two layers › Alpha-beta plaits › Oligo-peptide binding protein (OPPA) insertion domain › Oligo-peptide binding protein (OPPA) insertion domain 0.55 39.0 3.92e-01 94.3% 70.9%
3326734 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.54 29.0 3.05e-01 85.8% 54.7%
4972663 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.53 44.0 4.46e-01 91.5% 89.5%
3589979 225.1.1.0 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.53 42.0 4.19e-01 91.5% 80.9%
3429464 10.1.1.2 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.53 30.0 2.68e-01 76.4% 36.1%
4610032 225.1.1.0 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.51 44.0 3.74e-01 95.3% 56.7%
4989069 4081.1.1.0 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.50 46.0 4.08e-01 100.0% 96.0%
3387397 225.2.1.1 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › Uncharacterized protein DIP2311 middle domain › Uncharacterized protein DIP2311 middle domain › HATPase_c_4 0.50 41.0 3.09e-01 92.5% 36.5%