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IMGVR_UViG_2639762614_000001-2639762614-2640210167

Arc-Vir

IMGVR_UViG_2639762614_000001-2639762614-2640210167

Identity

Kingdom:
archaea

Quality

62.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-70
PDB
D2 high residues 72-185
PDB
Domain cluster: rep: IMGVR_UViG_2510065051_000001-2510065051-2510274505__D3-118
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2r5rA00 3.10.270.10 Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; 0.61 43.0 3.38e-01 72.8% 67.1%
3ub1A01 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 42.0 3.94e-01 71.1% 89.0%
7dmdA01 3.15.10.20 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Activator of Hsp90 ATPase Aha1, N-terminal domain 0.59 49.0 4.66e-01 89.5% 90.9%
2fxtA00 3.10.450.240 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 41.0 3.44e-01 74.6% 76.0%
2k4nA00 3.30.720.70 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.56 35.0 3.56e-01 78.9% 64.0%
3ddcB00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 45.0 4.34e-01 88.6% 90.2%
3zyvC06 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.54 43.0 3.31e-01 85.1% 73.3%
3cqnB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 47.0 4.16e-01 99.1% 90.1%
1a90A00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 35.0 3.67e-01 71.1% 97.2%
3k8aB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 40.0 4.23e-01 93.9% 91.3%
3f7xA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 36.0 3.49e-01 73.7% 92.5%
1dwnA00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.51 32.0 3.17e-01 70.2% 56.7%
4n6mB00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 35.0 3.52e-01 71.9% 87.1%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3513177 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.63 45.0 4.66e-01 72.8% 92.4%
3273629 12.3.1.13 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C 0.63 54.0 3.95e-01 93.9% 73.8%
5038450 3435.1.1.0 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.61 56.0 4.22e-01 100.0% 49.3%
3431418 9.2.1.4 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › DUF2921_N 0.60 53.0 4.48e-01 96.5% 90.0%
3463871 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.59 41.0 3.65e-01 71.9% 92.7%
3713462 216.1.1.3 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.58 47.0 4.03e-01 88.6% 70.8%
4016906 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.57 43.0 3.35e-01 79.8% 84.5%
3612452 243.1.1.86 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2_MEX67 0.56 40.0 3.06e-01 71.9% 81.6%
3738196 5.1.4.16 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.55 39.0 2.70e-01 73.7% 31.1%
3933721 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.55 40.0 3.53e-01 75.4% 69.1%
3654114 2484.1.1.26 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Piwi 0.54 42.0 3.53e-01 84.2% 65.7%
3610382 216.1.1.3 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.54 44.0 4.01e-01 88.6% 79.4%
3522631 243.3.1.28 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Spp-24 0.54 38.0 3.87e-01 72.8% 86.1%
4045816 243.3.1.28 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Spp-24 0.54 38.0 3.87e-01 71.9% 89.1%
3672372 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.54 29.0 3.42e-01 76.3% 77.3%
3980299 327.6.1.6 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like › Secretin 0.53 43.0 3.47e-01 87.7% 97.8%
1933318 327.6.1.6 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like › Secretin 0.53 43.0 3.34e-01 86.8% 82.5%
3466123 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.53 47.0 3.44e-01 94.7% 81.7%
3277579 11.13.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Leukocidin-like › Leukocidin-like 0.53 42.0 3.14e-01 86.0% 95.3%
3817782 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.52 42.0 3.98e-01 87.7% 77.9%
4015212 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.52 43.0 3.98e-01 89.5% 79.3%
3969015 7503.1.1.8 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › DUF4136 0.51 39.0 3.68e-01 81.6% 84.3%
3878247 243.3.1.1 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin 0.51 35.0 3.76e-01 71.1% 99.0%
4010371 295.1.1.45 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PF30238 0.51 31.0 3.36e-01 85.1% 71.6%
4199197 9.15.1.1 ↗ beta barrels › Lipocalins/Streptavidin › TLDC domain of oxidation resistance protein 2 › TLDC domain of oxidation resistance protein 2 › TLD 0.51 39.0 3.27e-01 83.3% 63.2%