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IMGVR_UViG_2639762639_000001-2639762639-2640309853
Arc-VirIMGVR_UViG_2639762639_000001-2639762639-2640309853
Identity
- Kingdom:
- archaea
Quality
90.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 77-184
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3qnfA04 | 1.10.3480.20 | Mainly Alpha › Orthogonal Bundle › TorD-like › | 0.68 | 35.0 | 2.96e-01 | 86.1% | 29.9% |
| 2gfnA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.67 | 44.0 | 3.63e-01 | 86.1% | 37.0% |
| 2nx4C00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.62 | 43.0 | 3.59e-01 | 86.1% | 41.2% |
| 2ccqA00 | 1.20.58.2190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 46.0 | 4.74e-01 | 82.4% | 97.0% |
| 1ohcA02 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.58 | 40.0 | 3.49e-01 | 70.4% | 52.1% |
| 1k78A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 30.0 | 3.69e-01 | 87.0% | 81.8% |
| 1xriA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.56 | 39.0 | 3.47e-01 | 72.2% | 51.0% |
| 1l3lA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 33.0 | 4.03e-01 | 79.6% | 100.0% |
| 3pasA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.55 | 43.0 | 3.54e-01 | 83.3% | 59.5% |
| 6jqsA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 32.0 | 3.86e-01 | 75.0% | 94.0% |
| 1on2A02 | 1.10.60.10 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Iron dependent repressor, metal binding and dimerisation domain | 0.54 | 32.0 | 3.95e-01 | 73.1% | 100.0% |
| 7eqeB01 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.53 | 41.0 | 3.56e-01 | 82.4% | 58.0% |
| 2lbfB01 | 1.10.10.1410 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.53 | 34.0 | 3.94e-01 | 91.7% | 100.0% |
| 3fhgA02 | 1.10.340.30 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 | 0.52 | 41.0 | 4.13e-01 | 94.4% | 82.3% |
| 3n0uA02 | 1.10.340.30 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 | 0.52 | 40.0 | 4.02e-01 | 94.4% | 81.7% |
| 5xsoA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 32.0 | 3.69e-01 | 79.6% | 88.2% |
| 2c41C01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.51 | 37.0 | 3.41e-01 | 75.9% | 73.2% |
| 3nrgA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 43.0 | 3.44e-01 | 93.5% | 53.0% |
| 2gz4A00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.50 | 39.0 | 3.31e-01 | 87.0% | 71.0% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3633 | 4218.1.1.1 ↗ | alpha bundles › TAFH domain-like › TAFH domain-like › TAFH domain-like › TAFH | 0.62 | 47.0 | 4.79e-01 | 81.5% | 90.7% |
| 4073883 | 5069.1.1.6 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › COX15-CtaA | 0.59 | 46.0 | 3.35e-01 | 83.3% | 96.8% |
| 3958076 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.59 | 48.0 | 3.47e-01 | 88.0% | 45.4% |
| 5081313 | 182.1.3.0 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX | 0.58 | 39.0 | 4.27e-01 | 80.6% | 84.4% |
| 5010276 | 101.1.3.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like | 0.57 | 49.0 | 4.60e-01 | 92.6% | 96.2% |
| 5042079 | 5060.1.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › V-type ATP synthase subunit C › V-type ATP synthase subunit C › vATP-synt_AC39 | 0.57 | 42.0 | 4.20e-01 | 76.9% | 79.1% |
| 4942022 | 182.1.3.3 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX › DNA_primase_lrg | 0.57 | 38.0 | 3.72e-01 | 73.1% | 61.7% |
| 3777242 | 3919.1.1.2 ↗ | alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN | 0.56 | 44.0 | 4.30e-01 | 84.3% | 76.7% |
| 4927804 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 38.0 | 4.38e-01 | 82.4% | 100.0% |
| 3176271 | 2007.2.3.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase2 | 0.55 | 40.0 | 3.26e-01 | 74.1% | 42.6% |
| 4237263 | 4964.1.1.1 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A | 0.55 | 38.0 | 3.73e-01 | 71.3% | 88.3% |
| 3620358 | 192.29.1.50 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › PTPLA | 0.55 | 42.0 | 3.43e-01 | 83.3% | 91.4% |
| 3890108 | 3919.1.1.2 ↗ | alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN | 0.55 | 41.0 | 4.10e-01 | 92.6% | 77.3% |
| 4965841 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.55 | 48.0 | 3.90e-01 | 100.0% | 72.7% |
| 4277995 | 628.1.1.1 ↗ | alpha bundles › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › FCD | 0.55 | 45.0 | 4.09e-01 | 94.4% | 73.8% |
| 3698971 | 2007.2.3.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase2 | 0.55 | 41.0 | 3.31e-01 | 77.8% | 43.5% |
| 3737889 | 2007.2.3.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase2 | 0.53 | 40.0 | 3.31e-01 | 77.8% | 45.4% |
| 3516776 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.53 | 42.0 | 3.88e-01 | 89.8% | 82.7% |
| 3258337 | 314.1.1.9 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His | 0.52 | 43.0 | 3.04e-01 | 91.7% | 45.9% |
| 3301041 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 34.0 | 3.55e-01 | 90.7% | 72.0% |
| 3277954 | 2008.1.1.67 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RecC_C | 0.52 | 41.0 | 2.94e-01 | 84.3% | 42.5% |
| 3288886 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.51 | 46.0 | 3.88e-01 | 100.0% | 91.7% |
| 4474376 | 7014.1.1.1 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA | 0.51 | 42.0 | 3.92e-01 | 88.9% | 87.4% |
| 4681426 | 314.1.1.9 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His | 0.50 | 44.0 | 3.10e-01 | 100.0% | 47.7% |
D2
medium
residues 10-64
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2k31A00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.60 | 48.0 | 3.67e-01 | 96.4% | 39.6% |
| 1ek9A00 | 1.20.1600.10 | Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.60 | 35.0 | 2.10e-01 | 98.2% | 7.5% |
| 4dq2A03 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 37.0 | 4.01e-01 | 72.7% | 74.5% |
| 3wj2B00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.59 | 42.0 | 2.62e-01 | 76.4% | 85.0% |
| 4hrvA00 | 3.40.50.10610 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component | 0.58 | 44.0 | 3.38e-01 | 85.5% | 35.3% |
| 2r41A00 | 3.10.450.150 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein | 0.57 | 47.0 | 3.96e-01 | 98.2% | 78.6% |
| 6hjfA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.56 | 46.0 | 3.36e-01 | 100.0% | 80.7% |
| 3licA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.56 | 44.0 | 3.20e-01 | 92.7% | 29.8% |
| 6g1yA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.55 | 45.0 | 3.57e-01 | 98.2% | 43.3% |
| 2ia1A01 | 3.30.500.20 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › BH3703-like domains | 0.54 | 41.0 | 3.29e-01 | 83.6% | 38.7% |
| 4akrA02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.53 | 38.0 | 3.01e-01 | 85.5% | 82.3% |
| 6y43A01 | 3.90.215.10 | Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 | 0.52 | 42.0 | 3.27e-01 | 100.0% | 50.3% |
| 5l2pA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 43.0 | 2.78e-01 | 100.0% | 40.8% |
| 1lmlA01 | 3.10.170.20 | Alpha Beta › Roll › Elastase; domain 1 › | 0.51 | 41.0 | 2.96e-01 | 90.9% | 86.5% |
| 2mcfA00 | 3.40.50.11630 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.50 | 40.0 | 2.93e-01 | 87.3% | 68.9% |
| 3v38A00 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.50 | 40.0 | 2.65e-01 | 100.0% | 73.4% |
| 4wy5A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.50 | 42.0 | 2.66e-01 | 100.0% | 40.9% |
| 2qdrA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.50 | 40.0 | 2.71e-01 | 100.0% | 56.8% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5047435 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.65 | 55.0 | 4.12e-01 | 98.2% | 39.6% |
| 3379082 | 2004.1.1.433 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 | 0.62 | 50.0 | 2.88e-01 | 92.7% | 10.1% |
| 3380131 | 5.1.3.67 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 | 0.59 | 50.0 | 3.09e-01 | 92.7% | 89.2% |
| 4962934 | 331.2.1.15 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › DUF7845 | 0.59 | 49.0 | 3.67e-01 | 100.0% | 43.1% |
| 3588199 | 281.1.1.1 ↗ | a+b three layers › AraD-like aldolase/epimerase › AraD-like aldolase/epimerase › AraD-like aldolase/epimerase › Aldolase_II | 0.57 | 44.0 | 3.05e-01 | 92.7% | 24.9% |
| 4037102 | 2011.1.1.8 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 | 0.57 | 48.0 | 2.96e-01 | 98.2% | 35.1% |
| 4382028 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 38.0 | 4.09e-01 | 72.7% | 97.5% |
| 3241603 | 223.2.1.37 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › C9orf72-like | 0.56 | 48.0 | 3.47e-01 | 98.2% | 37.6% |
| 3657444 | 3887.2.1.1 ↗ | a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung | 0.55 | 44.0 | 3.69e-01 | 92.7% | 77.1% |
| 2041633 | 79.1.1.0 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain | 0.55 | 40.0 | 4.01e-01 | 89.1% | 76.7% |
| 3623922 | 331.10.2.6 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › BBS7_pf | 0.55 | 41.0 | 3.62e-01 | 90.9% | 54.1% |
| 4237407 | 314.1.1.12 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat | 0.54 | 43.0 | 2.84e-01 | 94.5% | 64.7% |
| 3937193 | 223.2.1.37 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › C9orf72-like | 0.54 | 47.0 | 3.35e-01 | 100.0% | 35.4% |
| 5048830 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.53 | 45.0 | 3.57e-01 | 98.2% | 44.8% |
| 3718526 | 219.3.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › AnkH, inserted middle domain › AnkH, inserted middle domain | 0.53 | 46.0 | 2.94e-01 | 100.0% | 52.8% |
| 3351889 | 3887.2.1.1 ↗ | a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung | 0.53 | 43.0 | 3.48e-01 | 92.7% | 70.4% |
| 3489196 | 331.3.1.3 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START | 0.53 | 44.0 | 2.98e-01 | 98.2% | 70.0% |
| 4932898 | 3281.1.1.1 ↗ | alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M | 0.52 | 43.0 | 2.51e-01 | 100.0% | 29.3% |
| 3731250 | 264.1.1.6 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › HVSL | 0.52 | 36.0 | 2.52e-01 | 74.5% | 70.0% |
| 4928954 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.52 | 44.0 | 3.42e-01 | 100.0% | 79.2% |
| 3356323 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 39.0 | 2.45e-01 | 85.5% | 41.9% |
| 3871823 | 2004.1.1.433 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 | 0.51 | 40.0 | 2.44e-01 | 100.0% | 50.0% |
| 3315663 | 601.23.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III | 0.51 | 43.0 | 2.81e-01 | 96.4% | 92.5% |
| 4026794 | 2011.1.1.1 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M14 | 0.51 | 41.0 | 2.52e-01 | 100.0% | 28.3% |
| 3624927 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.51 | 39.0 | 3.40e-01 | 96.4% | 76.2% |
| 3508353 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.50 | 40.0 | 2.72e-01 | 94.5% | 88.4% |
| None | — | 0.50 | 42.0 | 2.66e-01 | 100.0% | 40.9% |