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IMGVR_UViG_2648501532_000002-2648501532-2650247017

Arc-Vir

IMGVR_UViG_2648501532_000002-2648501532-2650247017

Identity

Kingdom:
archaea

Quality

95.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-63
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF09962.15 best DUF2196 95.6 1.80e-27 100.0% 93.4%
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.68 60.0 4.93e-01 100.0% 58.7%
5zwzA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 58.0 5.41e-01 98.2% 88.6%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 57.0 5.29e-01 100.0% 88.9%
1b12C01 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.65 57.0 4.50e-01 100.0% 53.7%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.64 56.0 4.14e-01 100.0% 43.7%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 53.0 5.01e-01 93.0% 83.6%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 55.0 5.13e-01 100.0% 94.4%
2f5tX02 2.30.30.690 Mainly Beta › Roll › SH3 type barrels. › 0.63 53.0 4.67e-01 100.0% 83.3%
1ts9A00 2.30.30.210 Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 0.62 54.0 4.49e-01 100.0% 56.1%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 53.0 5.01e-01 100.0% 90.3%
4krtB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 51.0 4.89e-01 93.0% 92.5%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.61 50.0 4.86e-01 93.0% 93.7%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.61 53.0 4.81e-01 100.0% 81.8%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 55.0 4.97e-01 100.0% 85.3%
1zuuA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 48.0 4.84e-01 93.0% 94.6%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 48.0 4.66e-01 93.0% 82.8%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 48.0 4.36e-01 93.0% 67.1%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 49.0 4.51e-01 100.0% 75.3%
2v1rA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 48.0 4.58e-01 93.0% 86.6%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 46.0 4.54e-01 91.2% 90.3%
3jyyA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.58 38.0 2.93e-01 96.5% 28.4%
2krsA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 47.0 4.68e-01 94.7% 93.3%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.57 48.0 4.77e-01 100.0% 96.7%
1ixdA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.57 50.0 4.13e-01 100.0% 74.0%
3npfA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 46.0 4.36e-01 93.0% 84.3%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 44.0 4.27e-01 93.0% 77.1%
2fpeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 46.0 4.50e-01 93.0% 87.1%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 46.0 4.54e-01 93.0% 90.0%
1txqA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.57 49.0 4.54e-01 98.2% 98.6%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 43.0 4.22e-01 87.7% 88.7%
1d8cA02 2.170.170.11 Mainly Beta › Beta Complex › Malate synthase G - maily-beta sub-domain › Malate synthase G - maily-beta sub-domain 0.54 37.0 3.01e-01 73.7% 93.0%
8b2gA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 43.0 4.26e-01 89.5% 100.0%
1ne8A00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.54 44.0 3.66e-01 100.0% 76.7%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 44.0 4.20e-01 94.7% 82.4%
5jv4A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 45.0 3.48e-01 100.0% 51.4%
2yrvA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 44.0 3.65e-01 98.2% 53.1%
4ic5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 44.0 3.73e-01 100.0% 62.5%
1iy9A02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.52 41.0 4.27e-01 89.5% 96.2%
2b2cA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.52 44.0 4.24e-01 94.7% 92.2%
2o07A01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.52 42.0 4.23e-01 93.0% 91.5%
1e88A03 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.52 32.0 3.56e-01 89.5% 83.3%
1mbmA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 36.0 3.41e-01 100.0% 59.7%
2kssA01 2.30.30.630 Mainly Beta › Roll › SH3 type barrels. › 0.51 41.0 4.03e-01 93.0% 95.2%
1wqsA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 43.0 3.65e-01 100.0% 70.9%
1vx2I02 3.10.290.70 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › 0.51 42.0 3.48e-01 100.0% 78.8%
1qftB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 43.0 3.15e-01 100.0% 62.1%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4016285 4.1.1.185 beta barrels › SH3 › SH3 › SH3 › DUF2196 0.99 94.0 8.87e-01 100.0% 86.2%
3830352 4.1.1.94 beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.70 60.0 5.36e-01 100.0% 85.9%
4936914 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.68 60.0 4.94e-01 100.0% 60.0%
3185321 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.68 60.0 5.49e-01 100.0% 90.7%
4990503 4.11.1.2 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.68 60.0 4.67e-01 100.0% 53.6%
5040652 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.68 60.0 4.10e-01 100.0% 66.0%
3739064 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 58.0 5.64e-01 100.0% 96.9%
3540253 4.1.1.78 beta barrels › SH3 › SH3 › SH3 › TTD 0.66 58.0 4.93e-01 100.0% 72.6%
3518287 4.1.1.347 beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.66 56.0 4.49e-01 96.5% 53.9%
3167531 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.65 58.0 4.41e-01 100.0% 54.8%
4971532 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 56.0 5.26e-01 96.5% 78.6%
2410381 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.65 58.0 5.21e-01 100.0% 88.6%
3226615 4.1.1.389 beta barrels › SH3 › SH3 › SH3 › PF30352 0.65 56.0 4.78e-01 100.0% 63.2%
3723175 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.65 57.0 4.90e-01 100.0% 77.8%
3855974 4.1.1.253 beta barrels › SH3 › SH3 › SH3 › DUF4537 0.64 57.0 5.23e-01 100.0% 81.3%
3936726 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 54.0 5.56e-01 100.0% 100.0%
5039349 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 52.0 5.21e-01 93.0% 93.3%
3289944 4.1.1.323 beta barrels › SH3 › SH3 › SH3 › WYL 0.64 55.0 4.81e-01 100.0% 71.1%
3393358 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.64 56.0 4.75e-01 100.0% 62.1%
3608562 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 55.0 4.05e-01 100.0% 89.9%
3819164 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.63 55.0 3.97e-01 100.0% 55.9%
3609256 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 54.0 4.83e-01 100.0% 81.2%
3653487 4.1.1.324 beta barrels › SH3 › SH3 › SH3 › Nodulin_C 0.63 55.0 4.78e-01 100.0% 96.7%
3517415 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.63 55.0 5.28e-01 100.0% 90.8%
3559960 2006.1.6.66 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF4537 0.63 54.0 5.07e-01 98.2% 85.7%
4071824 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.63 55.0 5.04e-01 100.0% 82.7%
3649510 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.62 49.0 4.97e-01 100.0% 87.3%
3623141 4.1.1.217 beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 0.62 53.0 4.47e-01 98.2% 89.0%
3879172 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.62 52.0 5.00e-01 93.0% 84.6%
4982354 4.7.1.0 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.62 54.0 5.20e-01 98.2% 93.8%
3234107 4.1.1.169 beta barrels › SH3 › SH3 › SH3 › DUF4819 0.62 52.0 4.98e-01 100.0% 87.1%
4427477 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 53.0 4.57e-01 100.0% 63.2%
4306285 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 53.0 4.99e-01 96.5% 80.0%
4300449 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.62 52.0 4.98e-01 93.0% 81.5%
4964141 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.62 52.0 4.60e-01 100.0% 81.1%
3505711 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.62 54.0 4.77e-01 100.0% 69.4%
3581336 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 54.0 4.38e-01 100.0% 58.2%
3505589 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.62 54.0 4.26e-01 100.0% 49.2%
3879755 4.1.1.169 beta barrels › SH3 › SH3 › SH3 › DUF4819 0.61 53.0 4.42e-01 100.0% 69.5%
4250193 4.1.1.78 beta barrels › SH3 › SH3 › SH3 › TTD 0.61 51.0 4.52e-01 100.0% 73.3%
3791777 4.1.1.18 beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.61 52.0 4.61e-01 96.5% 88.2%
4015397 4.1.1.72 beta barrels › SH3 › SH3 › SH3 › Hva1_TUDOR 0.61 47.0 4.68e-01 86.0% 96.7%
3749194 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.61 48.0 4.69e-01 93.0% 79.7%
4000622 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.61 53.0 4.21e-01 100.0% 50.0%
4118552 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.61 52.0 4.84e-01 100.0% 82.7%
3794500 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.60 53.0 3.74e-01 100.0% 32.4%
3598499 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 52.0 3.96e-01 100.0% 58.6%
3932484 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 52.0 5.03e-01 100.0% 100.0%
3511007 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.60 51.0 4.12e-01 100.0% 55.0%
3616769 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.60 50.0 4.37e-01 100.0% 64.2%
5036592 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.60 53.0 4.84e-01 100.0% 81.3%
3481726 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 48.0 4.76e-01 91.2% 88.3%
3435006 4.1.1.308 beta barrels › SH3 › SH3 › SH3 › PF31073 0.59 50.0 4.82e-01 100.0% 98.5%
5063004 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 48.0 4.66e-01 93.0% 89.2%
5025498 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.59 48.0 4.29e-01 100.0% 81.1%
3742938 4.1.1.102 beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.58 46.0 4.52e-01 91.2% 86.2%
3581817 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.58 49.0 4.74e-01 100.0% 93.8%
3662319 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.58 49.0 4.48e-01 100.0% 85.0%
3846212 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.58 46.0 4.21e-01 93.0% 65.0%
3477037 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 47.0 4.45e-01 93.0% 81.4%
3784770 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.57 49.0 4.54e-01 100.0% 96.0%
3218475 4.1.1.390 beta barrels › SH3 › SH3 › SH3 › PF29855 0.57 48.0 3.89e-01 100.0% 66.7%
5037289 3699.1.1.1 beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.57 42.0 4.22e-01 82.5% 81.7%
3744811 4.11.1.2 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.56 45.0 3.45e-01 98.2% 51.0%
4520767 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.55 48.0 4.52e-01 100.0% 81.4%
5053906 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.54 46.0 4.60e-01 100.0% 93.3%
4041343 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.53 40.0 4.16e-01 86.0% 96.0%
4360803 3939.1.1.324 alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › Prot_ATP_ID_OB_N 0.50 35.0 2.75e-01 86.0% 31.9%
3256547 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 38.0 3.27e-01 86.0% 61.0%
4945758 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.50 37.0 3.52e-01 89.5% 67.1%