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IMGVR_UViG_2651870208_000001-2651870208-2654122310

Arc-Vir

IMGVR_UViG_2651870208_000001-2651870208-2654122310

Identity

Kingdom:
archaea

Quality

80.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 86-142
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2cr4A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.77 65.0 5.41e-01 93.0% 75.8%
2eo6A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.72 60.0 4.94e-01 94.7% 72.2%
2oq1A03 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.72 60.0 5.07e-01 96.5% 72.0%
1h9oA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.71 61.0 5.04e-01 100.0% 69.4%
2cs0A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.69 57.0 4.92e-01 96.5% 73.7%
1wquA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.69 57.0 4.62e-01 94.7% 57.9%
4ekfA00 3.40.395.10 Alpha Beta › 3-Layer(aba) Sandwich › Adenoviral Proteinase; Chain › Adenoviral Proteinase; Chain A 0.68 59.0 4.11e-01 100.0% 50.5%
3kvpA00 6.20.140.10 Special › Other non-globular › Immunoglobulin-like › 0.67 43.0 4.79e-01 93.0% 86.0%
1qypA00 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.67 46.0 4.63e-01 71.9% 94.7%
3l1aA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.66 57.0 3.91e-01 100.0% 75.9%
2pm6D01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.66 59.0 3.73e-01 100.0% 38.2%
2xp1A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.65 54.0 4.66e-01 96.5% 69.5%
1edzA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.64 55.0 4.09e-01 100.0% 42.3%
3a32A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.64 54.0 4.17e-01 100.0% 74.5%
1jofA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.64 48.0 2.94e-01 82.5% 41.6%
1v6zA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.63 52.0 5.04e-01 96.5% 100.0%
4on1A01 2.40.128.470 Mainly Beta › Beta Barrel › Lipocalin › 0.63 50.0 3.85e-01 91.2% 49.6%
2kc8A00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.62 50.0 4.28e-01 89.5% 61.1%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 47.0 3.59e-01 82.5% 82.8%
6aikB00 3.40.50.10300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CoaB-like 0.62 53.0 3.38e-01 100.0% 22.1%
6l4lA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.62 53.0 4.11e-01 100.0% 55.9%
5hy7B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 52.0 3.14e-01 100.0% 26.9%
7ykvB02 3.10.310.30 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.60 50.0 4.27e-01 100.0% 84.2%
2wozA00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.60 51.0 3.19e-01 94.7% 29.0%
2wadA04 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.60 45.0 2.90e-01 87.7% 62.1%
4i79A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 52.0 3.27e-01 100.0% 33.9%
1wxrA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.59 49.0 3.22e-01 93.0% 88.7%
4h5iB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 47.0 3.00e-01 96.5% 38.0%
3hfqA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 48.0 3.02e-01 94.7% 38.2%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.57 49.0 3.72e-01 96.5% 56.1%
4r03A00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.57 51.0 4.09e-01 100.0% 96.3%
3vseA01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.56 46.0 4.39e-01 96.5% 100.0%
1mdaH00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 45.0 2.83e-01 93.0% 28.3%
4j0xA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 49.0 3.04e-01 100.0% 90.7%
2hesX00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 47.0 3.03e-01 100.0% 29.5%
5jpmH01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 44.0 3.36e-01 93.0% 94.1%
3fgbA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 46.0 2.88e-01 100.0% 32.1%
4q52A00 2.60.40.3910 Mainly Beta › Sandwich › Immunoglobulin-like › Inclusion body protein 0.52 46.0 3.22e-01 98.2% 90.9%
5o46A00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 42.0 3.45e-01 94.7% 90.4%
4ci8A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 41.0 2.64e-01 93.0% 82.0%
1hczA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.51 33.0 3.36e-01 71.9% 64.4%
1a90A00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 41.0 3.47e-01 94.7% 98.1%
2ch9A01 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 41.0 3.39e-01 94.7% 93.8%
2xe4A02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.51 42.0 2.70e-01 100.0% 31.2%
1sjiA03 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 39.0 3.25e-01 94.7% 87.1%
ECOD (72)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4175925 4018.1.1.1 a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › FBPase 0.76 59.0 4.06e-01 84.2% 97.9%
3480379 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.73 62.0 5.12e-01 96.5% 76.2%
3618546 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.73 61.0 4.87e-01 94.7% 60.9%
3678781 7516.1.1.41 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glucan_synthase 0.72 62.0 3.45e-01 100.0% 14.9%
3805832 7516.1.1.41 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glucan_synthase 0.72 61.0 3.79e-01 100.0% 31.5%
3274180 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.71 59.0 4.88e-01 96.5% 65.5%
3854670 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.71 60.0 4.54e-01 96.5% 50.7%
3492079 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.71 59.0 5.05e-01 96.5% 72.2%
3477283 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.70 59.0 4.99e-01 96.5% 70.0%
3898271 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.70 59.0 4.42e-01 96.5% 50.7%
3516794 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.70 60.0 4.50e-01 96.5% 55.7%
3620802 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.70 59.0 4.69e-01 96.5% 61.0%
3878288 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.70 60.0 4.80e-01 100.0% 66.9%
3937854 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.70 59.0 4.95e-01 96.5% 70.0%
3399727 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.69 52.0 3.14e-01 80.7% 42.4%
3934183 214.1.1.9 a+b two layers › SH2 › SH2 › SH2 › DUF7063 0.69 57.0 4.71e-01 94.7% 73.3%
3506772 214.1.1.10 a+b two layers › SH2 › SH2 › SH2 › DUF7145 0.69 57.0 4.49e-01 94.7% 60.0%
4004358 252.2.1.3 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_1 0.68 43.0 4.52e-01 98.2% 72.0%
3909234 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.68 57.0 4.60e-01 96.5% 67.0%
5053120 7584.1.1.0 a/b three-layered sandwiches › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins 0.65 53.0 3.26e-01 94.7% 19.2%
3239473 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.65 58.0 3.58e-01 100.0% 33.9%
3218472 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.65 55.0 4.33e-01 98.2% 46.4%
3703176 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.65 40.0 4.39e-01 94.7% 79.5%
3938083 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.64 53.0 4.62e-01 98.2% 72.6%
4501486 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.64 57.0 3.55e-01 100.0% 36.0%
3848556 5.1.4.417 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › KNTC1_N 0.64 57.0 3.42e-01 100.0% 36.7%
3554160 5.1.4.18 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › EPTP 0.63 54.0 3.33e-01 94.7% 30.6%
3931076 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.63 51.0 4.23e-01 100.0% 75.0%
3705749 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 54.0 3.04e-01 94.7% 38.9%
134040 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.62 50.0 4.28e-01 89.5% 61.1%
4021315 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 53.0 3.31e-01 94.7% 31.9%
3724467 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.62 55.0 3.22e-01 100.0% 24.3%
None 0.61 52.0 3.19e-01 94.7% 25.1%
3605340 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 54.0 3.03e-01 96.5% 41.6%
3185751 5.1.4.36 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.61 53.0 3.23e-01 100.0% 27.4%
None 0.61 51.0 3.17e-01 94.7% 25.1%
3744012 5.1.4.16 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.60 51.0 3.15e-01 96.5% 26.9%
3579037 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.60 49.0 4.21e-01 100.0% 69.5%
3600186 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.60 49.0 4.31e-01 100.0% 91.6%
3912292 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.60 51.0 3.13e-01 94.7% 36.0%
3374847 5.1.3.12 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Str_synth 0.59 47.0 2.92e-01 86.0% 26.6%
3424389 207.1.1.103 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_R13L1-DRL21 0.59 45.0 2.96e-01 89.5% 26.7%
5047201 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.59 50.0 3.39e-01 100.0% 83.8%
3619626 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.58 48.0 4.19e-01 100.0% 73.7%
5045717 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.58 47.0 3.80e-01 100.0% 59.2%
3479152 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 50.0 3.15e-01 100.0% 29.1%
3771074 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.58 51.0 3.22e-01 100.0% 45.1%
3465990 5.1.4.404 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_IP5PC_F 0.58 50.0 3.13e-01 100.0% 51.5%
3715158 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.57 51.0 2.92e-01 100.0% 23.9%
3594792 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 50.0 3.18e-01 100.0% 44.7%
3811378 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.57 48.0 3.03e-01 100.0% 36.2%
3845022 5.1.11.11 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › WD40 0.57 50.0 2.87e-01 100.0% 23.9%
3296246 5.3.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › S_locus_glycop 0.57 48.0 3.54e-01 93.0% 91.0%
3469191 5.3.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.56 49.0 3.61e-01 94.7% 95.0%
3666734 5.3.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.56 48.0 3.61e-01 93.0% 92.3%
3705526 5.1.11.21 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › WD40, Beta-prop_NOL10_N 0.56 47.0 2.96e-01 100.0% 42.0%
3440635 5.3.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › S_locus_glycop 0.56 47.0 3.52e-01 93.0% 95.0%
3811580 5.3.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › S_locus_glycop 0.56 48.0 3.59e-01 94.7% 92.1%
3645253 5.1.3.65 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.56 48.0 3.10e-01 100.0% 39.7%
3968296 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 45.0 2.86e-01 94.7% 96.3%
5053246 2007.1.1.42 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › IFT52_GIFT 0.55 50.0 3.25e-01 100.0% 54.7%
3678440 5.3.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › S_locus_glycop 0.55 44.0 3.30e-01 87.7% 96.4%
3435355 5.3.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.55 46.0 3.45e-01 93.0% 92.1%
3230054 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 46.0 2.83e-01 91.2% 17.8%
4062573 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.54 42.0 3.76e-01 100.0% 82.0%
3366382 5.3.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.54 48.0 3.72e-01 96.5% 93.0%
3828945 11.1.4.55 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Self-incomp_S1 0.53 42.0 3.49e-01 98.2% 79.7%
3949933 5.1.4.14 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N 0.53 46.0 2.86e-01 100.0% 30.0%
3168111 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 44.0 2.76e-01 100.0% 39.7%
3803008 5.3.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › S_locus_glycop 0.53 39.0 3.11e-01 87.7% 37.9%
3181168 3939.1.1.0 alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain 0.53 43.0 2.68e-01 100.0% 60.8%
3715152 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.50 41.0 2.56e-01 94.7% 25.9%