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IMGVR_UViG_2654587756_000001-2654587756-2655682765

Arc-Vir

Identity

Accession:: IMGVR_UViG_2654587756_000001-2654587756-2655682765 ↗
Kingdom:: archaea

Quality

87.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 39-68_114-167_194-277

PDB

Domain cluster: rep: NC_018843.1__YP_006906669.1__SSU5_037__00037__D1-35_106-149_187-252

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF11185.14 best	DUF2971	23.1	2.10e-04	23.8%	37.1%

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2eo0B00	3.40.1350.10	Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 ›	0.69	31.0	3.64e-01	100.0%	58.9%
1sbqA00	3.40.50.10420	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NagB/RpiA/CoA transferase-like	0.68	28.0	2.84e-01	95.2%	37.8%
2zyzC00	3.40.1350.10	Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 ›	0.68	29.0	3.86e-01	99.4%	70.8%
1a79A01	3.40.1350.10	Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 ›	0.65	33.0	4.16e-01	100.0%	80.0%
3ajvC02	3.40.1350.10	Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 ›	0.62	29.0	3.81e-01	100.0%	79.1%
3ieyA02	3.40.1350.10	Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 ›	0.61	31.0	3.93e-01	99.4%	81.0%
2zyzB02	3.40.1350.10	Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 ›	0.57	28.0	3.56e-01	100.0%	78.9%
2pt7G02	3.30.1370.180	Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 ›	0.55	22.0	3.27e-01	94.6%	86.6%
3gkuA03	3.30.1370.50	Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain	0.53	21.0	3.05e-01	94.0%	80.3%

ECOD (25)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3244571	2008.2.1.1 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo	0.74	34.0	4.52e-01	99.4%	80.0%
5072012	2008.1.1.3 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc	0.71	32.0	4.33e-01	100.0%	80.0%
4956652	2008.2.1.1 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo	0.69	32.0	4.27e-01	99.4%	79.6%
5057784	2008.1.1.0 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like	0.69	34.0	4.61e-01	98.8%	87.4%
3625561	2008.2.1.1 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo	0.68	33.0	4.17e-01	99.4%	76.0%
3606648	2008.2.1.1 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo	0.68	33.0	3.84e-01	100.0%	63.3%
3249181	2008.2.1.1 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo	0.68	33.0	4.34e-01	99.4%	84.4%
4021620	323.1.1.0 ↗	a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases	0.68	32.0	3.27e-01	100.0%	45.6%
5081349	2008.2.1.1 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo	0.67	32.0	3.91e-01	99.4%	70.5%
4884047	2003.1.9.10 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF, E1_FCCH	0.66	27.0	2.84e-01	100.0%	40.5%
3913068	2008.2.1.1 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo	0.65	32.0	3.95e-01	100.0%	73.3%
4028316	2008.2.1.1 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo	0.65	31.0	4.18e-01	99.4%	84.4%
3474425	2008.2.1.1 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo	0.64	33.0	3.97e-01	99.4%	72.2%
4152182	2008.2.1.1 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo	0.64	31.0	3.96e-01	99.4%	77.9%
3409623	2008.2.1.1 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo	0.64	31.0	3.92e-01	100.0%	76.0%
5054762	2008.2.1.1 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo	0.63	34.0	4.19e-01	100.0%	81.9%
4947849	2008.2.1.0 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like	0.63	30.0	3.91e-01	99.4%	78.9%
4029435	2008.2.1.1 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo	0.62	32.0	3.95e-01	100.0%	78.1%
4932500	2008.2.1.1 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo	0.62	32.0	3.97e-01	99.4%	79.0%
4307642	2008.2.1.1 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo	0.62	32.0	3.94e-01	100.0%	78.1%
4945204	2008.2.1.0 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like	0.61	30.0	3.85e-01	99.4%	82.2%
4486867	3351.1.1.0 ↗	a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7	0.54	29.0	3.63e-01	78.6%	87.0%
4964434	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.52	27.0	3.51e-01	85.1%	92.2%
4971361	7592.1.1.3 ↗	a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › DUF6293_N	0.52	32.0	3.78e-01	99.4%	87.5%
4992769	101.1.2.30 ↗	alpha arrays › HTH › HTH › winged helix domain › TrmB	0.50	27.0	3.19e-01	91.7%	76.4%

D2 medium residues 69-113_168-193

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3iylW01	3.90.1810.10	Alpha Beta › Alpha-Beta Complex › Reovirus components fold › Reovirus components	0.60	43.0	2.74e-01	76.1%	76.0%
2cu2A00	3.90.550.10	Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	0.53	45.0	2.98e-01	100.0%	57.0%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3481531	223.2.1.19 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_1	0.59	42.0	3.26e-01	74.6%	64.5%