←Back to structures
IMGVR_UViG_2654587756_000002-2654587756-2655684301
Arc-VirIMGVR_UViG_2654587756_000002-2654587756-2655684301
Identity
- Kingdom:
- archaea
Quality
88.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 19-114
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13751.13 best | DDE_Tnp_1_6 | 32.2 | 1.70e-07 | 66.7% | 44.8% |
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4bf3A00 | 2.30.31.50 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Borrelia outer surface protein E/F | 0.58 | 48.0 | 4.36e-01 | 91.7% | 95.5% |
| 2czoA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.57 | 34.0 | 3.12e-01 | 92.7% | 43.1% |
| 4fwwA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.57 | 41.0 | 2.64e-01 | 76.0% | 20.3% |
| 6my0A02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 28.0 | 3.31e-01 | 91.7% | 67.7% |
| 5kcoA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 27.0 | 3.27e-01 | 77.1% | 69.5% |
| 4c47A01 | 2.60.40.1620 | Mainly Beta › Sandwich › Immunoglobulin-like › Lipoprotein YajI-like | 0.55 | 39.0 | 3.63e-01 | 72.9% | 90.2% |
| 2f5kA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 28.0 | 3.41e-01 | 75.0% | 88.0% |
| 2g2nC00 | 2.60.40.180 | Mainly Beta › Sandwich › Immunoglobulin-like › Transthyretin/hydroxyisourate hydrolase domain | 0.54 | 37.0 | 3.54e-01 | 70.8% | 100.0% |
| 1sp4B00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.54 | 37.0 | 2.92e-01 | 91.7% | 33.7% |
| 2h6uA00 | 2.60.40.180 | Mainly Beta › Sandwich › Immunoglobulin-like › Transthyretin/hydroxyisourate hydrolase domain | 0.53 | 36.0 | 3.47e-01 | 70.8% | 100.0% |
| 2lccA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 31.0 | 3.44e-01 | 95.8% | 72.4% |
| 2l33A00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.52 | 33.0 | 3.37e-01 | 89.6% | 64.8% |
| 2efiA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 31.0 | 3.09e-01 | 81.2% | 56.0% |
| 4nzrM02 | 2.160.20.180 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.51 | 42.0 | 3.46e-01 | 91.7% | 85.9% |
| 2byoA00 | 2.50.20.20 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › | 0.51 | 42.0 | 3.41e-01 | 89.6% | 77.6% |
| 4pswA02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 39.0 | 3.57e-01 | 84.4% | 82.0% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5019257 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.72 | 66.0 | 4.60e-01 | 97.9% | 35.9% |
| 3988067 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 53.0 | 5.57e-01 | 83.3% | 88.2% |
| 3587330 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.69 | 64.0 | 4.16e-01 | 100.0% | 27.7% |
| 3582933 | 3775.1.1.1 ↗ | beta barrels › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › CD36 | 0.62 | 52.0 | 3.39e-01 | 90.6% | 84.6% |
| 3400166 | 3775.1.1.1 ↗ | beta barrels › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › CD36 | 0.62 | 52.0 | 3.38e-01 | 90.6% | 83.6% |
| 3233642 | 3775.1.1.1 ↗ | beta barrels › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › CD36 | 0.62 | 51.0 | 3.36e-01 | 90.6% | 87.0% |
| 3389090 | 3775.1.1.1 ↗ | beta barrels › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › CD36 | 0.62 | 51.0 | 3.39e-01 | 90.6% | 83.0% |
| 3934758 | 3775.1.1.1 ↗ | beta barrels › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › CD36 | 0.62 | 51.0 | 3.32e-01 | 90.6% | 84.8% |
| 4168853 | 3775.1.1.1 ↗ | beta barrels › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › CD36 | 0.61 | 51.0 | 3.35e-01 | 90.6% | 86.3% |
| 3998766 | 3775.1.1.1 ↗ | beta barrels › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › CD36 | 0.61 | 48.0 | 3.21e-01 | 83.3% | 74.4% |
| 4334982 | 3775.1.1.1 ↗ | beta barrels › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › CD36 | 0.61 | 51.0 | 3.34e-01 | 90.6% | 87.1% |
| 3525883 | 3775.1.1.1 ↗ | beta barrels › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › CD36 | 0.61 | 50.0 | 3.33e-01 | 90.6% | 82.5% |
| 1884230 | 3775.1.1.1 ↗ | beta barrels › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › CD36 | 0.61 | 50.0 | 3.33e-01 | 90.6% | 83.7% |
| 3216518 | 3775.1.1.1 ↗ | beta barrels › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › CD36 | 0.60 | 50.0 | 3.29e-01 | 90.6% | 85.3% |
| 3913060 | 3775.1.1.1 ↗ | beta barrels › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › CD36 | 0.60 | 50.0 | 3.34e-01 | 90.6% | 85.8% |
| 4314497 | 3775.1.1.1 ↗ | beta barrels › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › CD36 | 0.60 | 50.0 | 3.26e-01 | 90.6% | 86.1% |
| 3803752 | 219.1.1.124 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PF29469 | 0.60 | 36.0 | 2.65e-01 | 97.9% | 21.5% |
| 3625547 | 3775.1.1.1 ↗ | beta barrels › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › CD36 | 0.59 | 49.0 | 3.22e-01 | 90.6% | 84.9% |
| 3232681 | 3775.1.1.1 ↗ | beta barrels › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › CD36 | 0.59 | 49.0 | 3.20e-01 | 90.6% | 87.8% |
| 4418386 | 3775.1.1.2 ↗ | beta barrels › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › PorA | 0.57 | 47.0 | 3.35e-01 | 90.6% | 78.0% |
| 3917372 | 4.1.1.101 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_2 | 0.57 | 32.0 | 3.60e-01 | 81.2% | 70.7% |
| 4071917 | 4.1.1.111 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_RapA | 0.57 | 27.0 | 3.46e-01 | 78.1% | 82.0% |
| 3853638 | 4.8.1.9 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_2 | 0.55 | 32.0 | 3.52e-01 | 72.9% | 68.8% |
| 3644309 | 71.1.1.12 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › DUF620 | 0.55 | 45.0 | 3.17e-01 | 90.6% | 91.8% |
| 3195922 | 3794.1.2.2 ↗ | a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › a+b domain in pyruvate carboxylase › HrmA | 0.55 | 40.0 | 3.88e-01 | 77.1% | 87.2% |
| 1567496 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.53 | 28.0 | 3.33e-01 | 76.0% | 78.9% |
| 4226134 | 2002.1.1.263 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IMPDH, FMN_dh | 0.53 | 44.0 | 3.09e-01 | 91.7% | 67.1% |
| 3281618 | 4.31.1.1 ↗ | beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL | 0.53 | 33.0 | 3.27e-01 | 93.8% | 58.0% |
| 3499785 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.53 | 35.0 | 2.38e-01 | 72.9% | 16.7% |
| 4284709 | 4.1.1.111 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_RapA | 0.52 | 26.0 | 3.20e-01 | 76.0% | 78.2% |
| 3443343 | 11.10.1.5 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 | 0.50 | 38.0 | 3.43e-01 | 83.3% | 89.0% |
| 3291492 | 243.3.1.5 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › FTP | 0.50 | 41.0 | 3.96e-01 | 90.6% | 89.1% |
| 140426 | 71.1.1.6 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LppX_LprAFG | 0.50 | 40.0 | 3.25e-01 | 89.6% | 74.9% |
D2
medium
residues 127-160
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6qv3A05 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 48.0 | 3.50e-01 | 76.5% | 67.7% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4031464 | 105.1.1.84 ↗ | alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain › DDE_Tnp_1_6 | 0.98 | 90.0 | 6.35e-01 | 100.0% | 37.8% |
| 4034539 | 105.1.1.84 ↗ | alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain › DDE_Tnp_1_6 | 0.92 | 80.0 | 5.07e-01 | 100.0% | 21.3% |
| 3942207 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.85 | 72.0 | 4.57e-01 | 100.0% | 19.4% |