←Back to structures
IMGVR_UViG_2654588107_000001-2654588107-2656947761
Arc-VirIMGVR_UViG_2654588107_000001-2654588107-2656947761
Identity
- Kingdom:
- archaea
Quality
83.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-90
Domain cluster:
representative
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4r3dA03 | 2.60.120.1680 | Mainly Beta › Sandwich › Jelly Rolls › | 0.68 | 43.0 | 3.70e-01 | 84.9% | 40.1% |
| 1qmyA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.68 | 40.0 | 3.27e-01 | 82.6% | 32.1% |
| 5chtB00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.67 | 53.0 | 3.54e-01 | 83.7% | 26.3% |
| 5cvmA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.66 | 52.0 | 3.50e-01 | 83.7% | 26.9% |
| 1yzbA01 | 3.90.70.40 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.66 | 55.0 | 4.86e-01 | 100.0% | 62.9% |
| 2j7qA00 | 3.90.70.120 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.65 | 52.0 | 3.84e-01 | 87.2% | 36.4% |
| 2yk0A03 | 1.20.58.1930 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 42.0 | 3.14e-01 | 72.1% | 57.7% |
| 3gd0A02 | 3.30.920.50 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain | 0.60 | 46.0 | 4.23e-01 | 81.4% | 83.0% |
| 1fblA02 | 2.110.10.10 | Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain | 0.60 | 44.0 | 3.41e-01 | 76.7% | 96.9% |
| 3fqmA01 | 2.20.25.210 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Hepatitis C NS5A, domain 1B | 0.60 | 36.0 | 4.10e-01 | 80.2% | 83.6% |
| 5h4eA02 | 3.30.920.50 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain | 0.59 | 45.0 | 4.06e-01 | 81.4% | 75.6% |
| 1fr3A00 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.59 | 33.0 | 3.76e-01 | 84.9% | 71.6% |
| 2wdtC02 | 3.30.1490.420 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ubiquitin carboxyl-terminal hydrolase, domain 2 | 0.59 | 46.0 | 4.39e-01 | 83.7% | 90.1% |
| 3zxkA02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.58 | 46.0 | 3.45e-01 | 86.0% | 76.9% |
| 1cruA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.57 | 41.0 | 2.61e-01 | 74.4% | 85.0% |
| 1ukfA00 | 3.90.70.20 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.57 | 47.0 | 3.73e-01 | 94.2% | 44.7% |
| 2it9A00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.56 | 38.0 | 3.47e-01 | 70.9% | 57.5% |
| 2af5A01 | 2.40.128.160 | Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) | 0.56 | 33.0 | 4.00e-01 | 98.8% | 92.6% |
| 2ltrA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.55 | 34.0 | 3.20e-01 | 87.2% | 50.5% |
| 5vmzA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.55 | 26.0 | 3.29e-01 | 79.1% | 89.7% |
| 1u9tA01 | 3.40.1570.10 | Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains | 0.54 | 38.0 | 3.20e-01 | 75.6% | 79.1% |
| 4nswA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 38.0 | 3.52e-01 | 73.3% | 86.2% |
| 3asiA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 47.0 | 3.77e-01 | 100.0% | 78.1% |
| 2elbA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 38.0 | 3.64e-01 | 74.4% | 79.4% |
| 1w2tA02 | 2.60.120.560 | Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 | 0.53 | 42.0 | 3.66e-01 | 86.0% | 85.8% |
| 3pg7A02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 36.0 | 3.37e-01 | 70.9% | 71.8% |
| 3ecqA01 | 2.60.120.870 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 42.0 | 3.40e-01 | 89.5% | 61.7% |
| 1pz7A00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 45.0 | 3.61e-01 | 100.0% | 62.2% |
| 6grrB01 | 3.30.457.10 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Copper amine oxidase-like, N-terminal domain | 0.52 | 38.0 | 3.98e-01 | 87.2% | 83.5% |
| 4jpdA00 | 3.30.920.10 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY | 0.52 | 37.0 | 3.49e-01 | 75.6% | 88.1% |
| 4chmB00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 38.0 | 3.50e-01 | 81.4% | 81.5% |
| 3fssA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 34.0 | 3.50e-01 | 70.9% | 87.2% |
ECOD (66)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1844150 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.67 | 52.0 | 3.51e-01 | 82.6% | 25.3% |
| 4965206 | 4221.1.1.3 ↗ | a+b two layers › YkuJ-like › YkuJ-like › YkuJ-like › PF26008 | 0.66 | 46.0 | 5.03e-01 | 79.1% | 90.0% |
| 3932677 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.66 | 50.0 | 4.09e-01 | 83.7% | 45.6% |
| 3929729 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.65 | 45.0 | 3.50e-01 | 72.1% | 76.4% |
| 3427234 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.64 | 50.0 | 3.60e-01 | 83.7% | 32.2% |
| 3512735 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.64 | 44.0 | 3.26e-01 | 70.9% | 66.2% |
| 3692594 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.64 | 51.0 | 3.21e-01 | 83.7% | 20.2% |
| 3832604 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.63 | 50.0 | 2.95e-01 | 83.7% | 12.6% |
| 3595430 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.63 | 43.0 | 3.30e-01 | 70.9% | 71.5% |
| 4029401 | 219.1.1.14 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Josephin | 0.63 | 57.0 | 4.42e-01 | 100.0% | 51.4% |
| 3377025 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.63 | 49.0 | 3.28e-01 | 83.7% | 23.2% |
| 3436173 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.63 | 49.0 | 3.31e-01 | 83.7% | 25.2% |
| 3290662 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.62 | 45.0 | 4.03e-01 | 89.5% | 52.3% |
| 3826272 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.62 | 48.0 | 3.26e-01 | 84.9% | 25.1% |
| 3463325 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.62 | 48.0 | 3.44e-01 | 83.7% | 34.1% |
| 3808690 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.62 | 48.0 | 3.35e-01 | 83.7% | 28.2% |
| 3468148 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.62 | 48.0 | 3.72e-01 | 84.9% | 41.0% |
| 3600084 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.61 | 48.0 | 3.31e-01 | 83.7% | 37.8% |
| 5030570 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.61 | 42.0 | 3.43e-01 | 72.1% | 81.8% |
| 3360341 | 219.1.1.14 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Josephin | 0.61 | 55.0 | 4.15e-01 | 100.0% | 43.4% |
| 3250807 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.61 | 43.0 | 3.30e-01 | 73.3% | 80.5% |
| 3453949 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.61 | 47.0 | 3.25e-01 | 84.9% | 25.3% |
| 3524963 | 219.1.1.122 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PF28648 | 0.61 | 45.0 | 3.07e-01 | 83.7% | 21.6% |
| 3837507 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.61 | 51.0 | 3.81e-01 | 93.0% | 45.9% |
| 4013297 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.61 | 42.0 | 3.30e-01 | 72.1% | 74.6% |
| 4940356 | 219.1.1.97 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CEPT76_peptidase | 0.60 | 42.0 | 3.33e-01 | 73.3% | 36.8% |
| 3823449 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.60 | 48.0 | 3.30e-01 | 84.9% | 27.9% |
| 3218205 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.60 | 51.0 | 4.53e-01 | 94.2% | 93.6% |
| 5081724 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.60 | 42.0 | 3.21e-01 | 72.1% | 79.5% |
| 3597933 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.60 | 41.0 | 3.26e-01 | 72.1% | 79.3% |
| 3937635 | 3257.1.1.1 ↗ | a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N | 0.60 | 49.0 | 3.82e-01 | 90.7% | 91.1% |
| 3222321 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.59 | 44.0 | 3.14e-01 | 79.1% | 27.8% |
| 4239781 | 3006.1.1.6 ↗ | a+b two layers › Sm-Like archaeal protein Smap3, C-terminal domain › Sm-Like archaeal protein Smap3, C-terminal domain › Sm-Like archaeal protein Smap3, C-terminal domain › CPSF73-100_C | 0.58 | 33.0 | 3.63e-01 | 82.6% | 68.6% |
| 5013176 | 4100.1.1.0 ↗ | a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like | 0.58 | 40.0 | 4.24e-01 | 72.1% | 97.3% |
| 3593073 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.57 | 40.0 | 3.10e-01 | 72.1% | 73.8% |
| 3219185 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.57 | 46.0 | 3.88e-01 | 87.2% | 69.0% |
| 3254948 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.57 | 40.0 | 3.08e-01 | 73.3% | 82.8% |
| 3254772 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.57 | 39.0 | 2.97e-01 | 72.1% | 80.0% |
| 3248612 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.57 | 39.0 | 3.12e-01 | 72.1% | 76.2% |
| 3882452 | 633.23.1.1 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin | 0.56 | 39.0 | 3.08e-01 | 72.1% | 70.8% |
| 3901787 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.56 | 48.0 | 3.86e-01 | 95.3% | 77.1% |
| 3211176 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.56 | 41.0 | 2.94e-01 | 77.9% | 26.3% |
| 4993459 | 512.1.1.2 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd | 0.56 | 36.0 | 2.77e-01 | 90.7% | 28.7% |
| 3306543 | 331.4.1.9 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › CPSF73-100_C | 0.56 | 31.0 | 3.45e-01 | 80.2% | 68.6% |
| 3710731 | 633.23.1.23 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › Amastin | 0.55 | 38.0 | 3.09e-01 | 72.1% | 77.7% |
| 4024468 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.55 | 43.0 | 3.37e-01 | 86.0% | 53.5% |
| 3925491 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.55 | 39.0 | 2.97e-01 | 75.6% | 68.6% |
| 3888075 | 633.23.1.1 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin | 0.55 | 38.0 | 2.97e-01 | 72.1% | 71.3% |
| 3251374 | 10.1.1.35 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 | 0.55 | 44.0 | 3.28e-01 | 89.5% | 47.9% |
| 3227356 | 633.23.1.4 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › Claudin_2 | 0.55 | 38.0 | 2.96e-01 | 74.4% | 74.9% |
| 3234981 | 633.23.1.4 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › Claudin_2 | 0.55 | 39.0 | 2.99e-01 | 74.4% | 71.4% |
| 3507415 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.55 | 46.0 | 3.64e-01 | 95.3% | 75.3% |
| 3263180 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.54 | 38.0 | 3.55e-01 | 73.3% | 76.4% |
| 3579987 | 220.1.1.160 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_MADD | 0.54 | 37.0 | 3.49e-01 | 72.1% | 71.8% |
| 3544780 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.54 | 45.0 | 3.63e-01 | 96.5% | 63.4% |
| 416852 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.54 | 47.0 | 3.76e-01 | 100.0% | 77.7% |
| 3263503 | 331.4.1.9 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › CPSF73-100_C | 0.54 | 31.0 | 3.34e-01 | 81.4% | 65.3% |
| 3292855 | 220.1.1.36 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 | 0.53 | 39.0 | 3.49e-01 | 77.9% | 77.6% |
| 3604518 | 3111.1.1.0 ↗ | beta barrels › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain | 0.53 | 40.0 | 3.83e-01 | 80.2% | 96.0% |
| 3175626 | 331.1.1.13 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › CPSF73-100_C | 0.53 | 34.0 | 3.61e-01 | 81.4% | 74.7% |
| 3389671 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.53 | 38.0 | 2.98e-01 | 75.6% | 70.5% |
| 4989110 | 884.1.1.1 ↗ | a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › CobW_C | 0.52 | 35.0 | 3.66e-01 | 86.0% | 75.0% |
| 3389900 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.52 | 44.0 | 3.52e-01 | 97.7% | 61.1% |
| 3923512 | 220.1.1.66 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH | 0.52 | 35.0 | 3.23e-01 | 70.9% | 75.0% |
| 3263647 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 35.0 | 3.23e-01 | 70.9% | 65.8% |
| 3625037 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.52 | 38.0 | 3.27e-01 | 77.9% | 51.9% |