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IMGVR_UViG_2654588138_000001-2654588138-2657039781
Arc-VirIMGVR_UViG_2654588138_000001-2654588138-2657039781
Identity
- Kingdom:
- archaea
Quality
67.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-125
D2
high
residues 165-231
D3
high
residues 517-695
Domain cluster:
rep: NC_021330__YP_008059651.1__M202-gp129__00089__D21-171
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00004.36 best | AAA | 69.4 | 6.10e-19 | 73.7% | 97.7% |
| PF07728.21 | AAA_5 | 24.0 | 4.60e-05 | 44.7% | 56.8% |
D4
high
residues 700-781
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF17866.9 best | AAA_lid_6 | 80.3 | 1.40e-22 | 100.0% | 87.1% |
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3sykA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.93 | 86.0 | 8.30e-01 | 100.0% | 87.8% |
| 1iqpA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.76 | 51.0 | 5.67e-01 | 100.0% | 89.1% |
| 3uk6A02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.75 | 56.0 | 5.61e-01 | 100.0% | 78.3% |
| 3zh9B02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.74 | 52.0 | 5.51e-01 | 100.0% | 85.7% |
| 3d8bB02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.74 | 60.0 | 6.02e-01 | 100.0% | 89.0% |
| 2c9oB03 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.73 | 53.0 | 5.34e-01 | 100.0% | 75.9% |
| 7wd3A02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.73 | 60.0 | 6.05e-01 | 100.0% | 89.0% |
| 2v6zM00 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.72 | 56.0 | 5.87e-01 | 100.0% | 93.3% |
| 1jqjD03 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.70 | 48.0 | 4.81e-01 | 100.0% | 69.8% |
| 4fwdA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.65 | 50.0 | 5.16e-01 | 100.0% | 87.2% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4415082 | 148.1.3.23 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_6 | 0.94 | 90.0 | 8.66e-01 | 100.0% | 92.2% |
| 3949634 | 148.1.3.23 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_6 | 0.90 | 85.0 | 7.43e-01 | 100.0% | 85.2% |
| 4649085 | 148.1.3.23 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_6 | 0.90 | 85.0 | 7.67e-01 | 100.0% | 82.9% |
| 3953286 | 148.1.3.23 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_6 | 0.89 | 84.0 | 7.48e-01 | 100.0% | 84.5% |
| 4680072 | 148.1.3.23 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_6 | 0.89 | 85.0 | 7.83e-01 | 100.0% | 82.0% |
| 3289682 | 148.1.3.23 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_6 | 0.89 | 83.0 | 7.40e-01 | 100.0% | 89.1% |
| 4238496 | 148.1.3.23 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_6 | 0.89 | 82.0 | 7.50e-01 | 100.0% | 86.7% |
| 4013995 | 148.1.3.23 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_6 | 0.88 | 79.0 | 7.86e-01 | 100.0% | 91.8% |
| 4011290 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.86 | 75.0 | 7.49e-01 | 100.0% | 90.6% |
| 4020961 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.84 | 79.0 | 7.66e-01 | 100.0% | 94.4% |
| 4011306 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.84 | 78.0 | 7.59e-01 | 100.0% | 97.8% |
| 4014858 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.83 | 74.0 | 6.67e-01 | 100.0% | 71.8% |
| 4011919 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.82 | 77.0 | 6.85e-01 | 100.0% | 97.3% |
| 5082288 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.81 | 56.0 | 5.84e-01 | 100.0% | 78.7% |
| 5020254 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.79 | 55.0 | 6.03e-01 | 100.0% | 90.8% |
| 5023502 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.79 | 65.0 | 6.04e-01 | 100.0% | 72.0% |
| 3459902 | 148.1.3.220 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF29043 | 0.78 | 71.0 | 6.41e-01 | 100.0% | 81.8% |
| 3219559 | 148.1.3.19 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 | 0.77 | 62.0 | 6.18e-01 | 100.0% | 83.5% |
| 5050506 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.77 | 63.0 | 6.23e-01 | 100.0% | 84.7% |
| 3310234 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.77 | 57.0 | 5.96e-01 | 100.0% | 86.7% |
| 3691623 | 148.1.3.212 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_13 | 0.76 | 66.0 | 6.34e-01 | 100.0% | 83.2% |
| 5041664 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.75 | 61.0 | 6.09e-01 | 100.0% | 84.7% |
| 4976513 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.74 | 50.0 | 5.24e-01 | 79.3% | 77.3% |
| 3508731 | 148.1.3.9 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Dpoe2NT | 0.72 | 57.0 | 5.72e-01 | 100.0% | 83.5% |
| 3596559 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.69 | 61.0 | 5.78e-01 | 100.0% | 87.0% |
| 4940788 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.69 | 53.0 | 5.20e-01 | 84.1% | 77.8% |
| 3681767 | 148.1.3.26 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_9 | 0.66 | 58.0 | 5.09e-01 | 100.0% | 68.0% |
| 3651184 | 4957.1.1.7 ↗ | a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit › MOM1 | 0.65 | 48.0 | 5.06e-01 | 90.2% | 86.7% |
| 3164868 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.64 | 53.0 | 5.26e-01 | 100.0% | 88.2% |
| 4566192 | 3277.1.1.1 ↗ | alpha arrays › Thymine dioxygenase JBP1 DNA-binding domain-like › Thymine dioxygenase JBP1 DNA-binding domain › Thymine dioxygenase JBP1 DNA-binding domain › DB_JBP1 | 0.55 | 40.0 | 3.13e-01 | 75.6% | 40.6% |
| 3213947 | 3651.1.1.0 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain | 0.54 | 50.0 | 4.17e-01 | 100.0% | 79.3% |
| 3191012 | 103.4.1.2 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › TFIIS_M | 0.52 | 46.0 | 4.29e-01 | 100.0% | 79.0% |
D5
medium
residues 308-326_404-508
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2fji101 | 1.10.357.50 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › | 0.69 | 49.0 | 4.06e-01 | 72.6% | 50.2% |
| 2yfaA02 | 1.20.1440.210 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.65 | 40.0 | 4.15e-01 | 74.2% | 65.5% |
| 3mvcB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.63 | 49.0 | 4.56e-01 | 81.5% | 79.2% |
| 4hzuS00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.61 | 46.0 | 4.18e-01 | 78.2% | 99.4% |
| 3f4mA00 | 1.20.1440.160 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like | 0.61 | 42.0 | 3.92e-01 | 95.2% | 55.8% |
| 7b00A01 | 1.20.1740.10 | Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I | 0.60 | 48.0 | 3.26e-01 | 84.7% | 58.7% |
| 3uo2B02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.59 | 38.0 | 4.38e-01 | 74.2% | 95.2% |
| 2hroA02 | 1.10.274.10 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › PtsI, HPr-binding domain | 0.57 | 40.0 | 4.02e-01 | 81.5% | 69.5% |
| 6xz3A01 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.57 | 44.0 | 4.49e-01 | 96.8% | 86.3% |
| 7sf8A01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.57 | 46.0 | 3.73e-01 | 98.4% | 45.2% |
| 4jioA01 | 1.20.120.560 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › alix/aip1 in complex with the ypdl late domain | 0.52 | 39.0 | 3.58e-01 | 77.4% | 69.6% |
| 5h5mA02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.52 | 43.0 | 4.30e-01 | 96.8% | 86.2% |
| 3axjB02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.51 | 33.0 | 3.87e-01 | 96.0% | 95.3% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5009834 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.67 | 40.0 | 4.59e-01 | 75.0% | 78.9% |
| 3997160 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.65 | 38.0 | 4.20e-01 | 83.9% | 71.0% |
| 3604551 | 106.1.1.0 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like | 0.64 | 51.0 | 4.59e-01 | 84.7% | 79.4% |
| 3939253 | 109.4.1.17 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cullin | 0.64 | 44.0 | 3.09e-01 | 70.2% | 26.8% |
| 3708 | 601.1.2.6 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › Talin_IBS2B | 0.63 | 42.0 | 4.19e-01 | 72.6% | 64.8% |
| 5031855 | 632.15.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) | 0.63 | 32.0 | 3.92e-01 | 73.4% | 75.0% |
| 4020741 | 4953.1.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like | 0.62 | 47.0 | 3.80e-01 | 80.6% | 64.5% |
| 3590491 | 604.39.1.33 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › ThrE | 0.62 | 47.0 | 4.59e-01 | 79.8% | 97.0% |
| 3784672 | 133.1.1.0 ↗ | alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) | 0.61 | 47.0 | 4.23e-01 | 80.6% | 94.1% |
| 4972007 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.58 | 40.0 | 3.85e-01 | 81.5% | 60.7% |
| 5010954 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.58 | 41.0 | 4.29e-01 | 96.8% | 80.9% |
| 3600055 | 633.6.1.0 ↗ | alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like | 0.57 | 37.0 | 3.77e-01 | 75.8% | 64.8% |
| 3330281 | 4992.1.1.0 ↗ | extended segments › RelB-like › RelB-like › RelB-like | 0.57 | 35.0 | 3.72e-01 | 75.0% | 67.3% |
| 4606233 | 5045.1.1.1 ↗ | alpha bundles › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › ATP-synt_A | 0.57 | 47.0 | 3.86e-01 | 91.1% | 79.1% |
| 4028151 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.56 | 36.0 | 4.06e-01 | 71.0% | 84.2% |
| 3529785 | 601.1.2.6 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › Talin_IBS2B | 0.56 | 42.0 | 4.19e-01 | 97.6% | 78.4% |
| 5028028 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.55 | 39.0 | 3.85e-01 | 77.4% | 66.7% |
| 4212526 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.54 | 38.0 | 3.88e-01 | 72.6% | 84.2% |
| 4976497 | 4163.1.1.0 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like | 0.53 | 34.0 | 3.47e-01 | 78.2% | 66.7% |
| 3696407 | 4121.1.1.7 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › PF26616 | 0.51 | 40.0 | 3.26e-01 | 83.9% | 60.9% |
| 4095698 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.50 | 35.0 | 3.66e-01 | 75.8% | 77.4% |
| 3564399 | 3755.3.1.282 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Tmemb_cc2 | 0.50 | 37.0 | 3.88e-01 | 76.6% | 88.7% |