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IMGVR_UViG_2654588138_000001-2654588138-2657039789
Arc-VirIMGVR_UViG_2654588138_000001-2654588138-2657039789
Identity
- Kingdom:
- archaea
Quality
88.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-34
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5cygB00 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.81 | 57.0 | 3.26e-01 | 72.7% | 24.6% |
| 3u1nB01 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.76 | 63.0 | 3.66e-01 | 100.0% | 11.6% |
| 2x49A04 | 3.40.50.12790 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › FHIPEP family, domain 4 | 0.75 | 65.0 | 4.55e-01 | 100.0% | 32.3% |
| 2pjdA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.75 | 51.0 | 3.22e-01 | 72.7% | 13.6% |
| 3ic3A01 | 3.30.2370.10 | Alpha Beta › 2-Layer Sandwich › putative pyruvate dehydrogenase fold › putative pyruvate dehydrogenase | 0.74 | 53.0 | 4.33e-01 | 78.8% | 40.6% |
| 3gwiA00 | 3.40.1110.10 | Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N | 0.72 | 51.0 | 3.26e-01 | 75.8% | 15.2% |
| 2xgvA00 | 1.10.375.10 | Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein | 0.69 | 59.0 | 3.97e-01 | 100.0% | 100.0% |
| 2xguB00 | 1.10.375.10 | Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein | 0.69 | 55.0 | 3.65e-01 | 100.0% | 22.4% |
| 3btxA00 | 2.60.120.590 | Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like | 0.67 | 54.0 | 3.37e-01 | 97.0% | 18.1% |
| 2fsjA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.66 | 58.0 | 3.80e-01 | 100.0% | 29.7% |
| 1e8cA01 | 3.40.1390.10 | Alpha Beta › 3-Layer(aba) Sandwich › Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase; Chain: A, domain 1 › MurE/MurF, N-terminal domain | 0.66 | 46.0 | 3.33e-01 | 84.8% | 24.8% |
| 3h6eB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.65 | 46.0 | 3.30e-01 | 75.8% | 52.5% |
| 7oslA02 | 3.40.50.12790 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › FHIPEP family, domain 4 | 0.64 | 54.0 | 3.92e-01 | 100.0% | 33.0% |
| 1tbxB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 44.0 | 3.67e-01 | 100.0% | 36.7% |
| 3tndB01 | 2.10.260.10 | Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › | 0.64 | 43.0 | 4.09e-01 | 75.8% | 56.1% |
| 7d4rB01 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.64 | 54.0 | 3.34e-01 | 100.0% | 43.4% |
| 3oqgA00 | 3.40.1440.50 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › | 0.63 | 53.0 | 3.34e-01 | 97.0% | 58.0% |
| 7f0uA01 | 1.10.8.1190 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Papain-like viral protease, thumb domain | 0.58 | 42.0 | 3.00e-01 | 78.8% | 44.2% |
| 1mhmA00 | 3.60.90.10 | Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase | 0.58 | 39.0 | 2.40e-01 | 72.7% | 9.1% |
| 1b48A01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.53 | 42.0 | 3.06e-01 | 90.9% | 77.1% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3454770 | 109.4.1.621 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_3 | 0.82 | 56.0 | 3.26e-01 | 72.7% | 9.3% |
| 3726389 | 3887.1.1.0 ↗ | a+b two layers › Yeast killer toxin-like › Yeast killer toxin-like › Yeast killer toxin-like | 0.76 | 61.0 | 4.03e-01 | 87.9% | 23.1% |
| 5015831 | 2008.1.1.107 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD | 0.67 | 52.0 | 3.43e-01 | 84.8% | 67.4% |
| 3278688 | 2003.1.1.65 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_7 | 0.67 | 57.0 | 3.66e-01 | 97.0% | 97.4% |
| 3960493 | 1001.1.1.0 ↗ | a+b two layers › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 | 0.67 | 49.0 | 3.43e-01 | 87.9% | 29.6% |
| 4027959 | 2492.1.1.11 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › NPL4 | 0.66 | 55.0 | 3.28e-01 | 90.9% | 40.4% |
| 4990060 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.62 | 45.0 | 4.30e-01 | 87.9% | 97.7% |
| 4986728 | 316.1.1.27 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta | 0.61 | 55.0 | 3.71e-01 | 100.0% | 28.7% |
| 4992409 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.56 | 40.0 | 3.86e-01 | 87.9% | 100.0% |
| 5067548 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.56 | 41.0 | 3.89e-01 | 87.9% | 97.8% |
| 3907976 | 377.9.1.8 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-FCS | 0.55 | 42.0 | 3.82e-01 | 84.8% | 95.6% |
| 4947865 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.53 | 36.0 | 3.45e-01 | 81.8% | 92.0% |