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IMGVR_UViG_2667527400_000001-2667527400-2667995897

Arc-Vir

IMGVR_UViG_2667527400_000001-2667527400-2667995897

Identity

Kingdom:
archaea

Quality

87.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 15-186
PDB
Pfam (7)
AccessionNameScoreE-valueQ covHMM cov
PF13432.13 best TPR_16 23.4 9.40e-05 35.5% 80.0%
PF14559.13 TPR_19 26.7 7.70e-06 33.1% 75.0%
PF13181.13 TPR_8 22.8 1.00e-04 19.8% 85.3%
PF07719.24 TPR_2 23.9 4.40e-05 19.2% 79.4%
PF13181.13 TPR_8 12.9 1.50e-01 16.3% 67.7%
PF13374.13 TPR_10 21.2 3.20e-04 15.7% 61.9%
PF13181.13 TPR_8 13.3 1.10e-01 11.1% 52.9%
D2 medium residues 190-339
PDB
Domain cluster: representative
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1mkmB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 33.0 4.59e-01 99.3% 80.3%
7cluA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 33.0 4.32e-01 95.3% 70.8%
4a6dA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 35.0 4.42e-01 96.0% 72.3%
3dpuA03 1.10.10.2200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.74 35.0 4.84e-01 96.7% 89.3%
2pjpA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 32.0 4.89e-01 98.0% 100.0%
2pg4A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 37.0 4.72e-01 93.3% 80.2%
3lmmB05 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 32.0 4.86e-01 99.3% 100.0%
7txnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 34.0 4.41e-01 92.7% 75.6%
1cf7A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 34.0 4.84e-01 99.3% 97.0%
1y0uA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 32.0 4.07e-01 93.3% 68.5%
3gwzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 34.0 4.32e-01 96.0% 74.2%
4jqfA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 35.0 5.07e-01 96.7% 98.6%
3to7A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 33.0 4.40e-01 99.3% 80.2%
3cuqB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 32.0 4.58e-01 100.0% 91.3%
2nriB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 37.0 4.69e-01 80.7% 82.6%
4kibA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 33.0 4.03e-01 95.3% 66.7%
4i2oA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 33.0 4.39e-01 99.3% 82.5%
2fswA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 36.0 4.31e-01 87.3% 72.5%
3m8eA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 37.0 4.47e-01 90.7% 76.2%
2l01A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 33.0 4.43e-01 100.0% 87.0%
1z7uB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 38.0 4.37e-01 83.3% 74.5%
3edpA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 31.0 4.16e-01 100.0% 85.5%
4p9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 31.0 4.39e-01 99.3% 97.0%
4yo2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 31.0 4.37e-01 100.0% 94.4%
4esjA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 39.0 4.93e-01 84.0% 98.9%
2fmyA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 32.0 4.21e-01 96.7% 86.6%
2hs5A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 30.0 4.24e-01 100.0% 97.0%
3eetA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 29.0 4.24e-01 100.0% 100.0%
3tqnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 30.0 4.15e-01 100.0% 91.8%
7dg2C01 1.10.10.1200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAGE homology domain, winged helix WH1 motif 0.62 32.0 4.29e-01 96.7% 97.3%
2vqcA00 1.10.10.1470 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › F-112 protein-like 0.62 30.0 4.15e-01 99.3% 97.1%
3c7jA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 29.0 3.66e-01 100.0% 72.5%
2plyB01 1.10.10.2770 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.57 42.0 4.40e-01 95.3% 84.1%
7vb8A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 33.0 3.74e-01 94.0% 77.9%
1keaA02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.51 33.0 3.66e-01 96.0% 83.2%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3280479 101.1.2.26 alpha arrays › HTH › HTH › winged helix domain › HxlR 0.83 35.0 4.50e-01 94.7% 66.7%
4986928 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.81 36.0 4.74e-01 91.3% 73.0%
4987460 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.81 36.0 4.97e-01 93.3% 81.2%
4992875 101.1.2.279 alpha arrays › HTH › HTH › winged helix domain › AbiEi_4 0.79 35.0 4.91e-01 93.3% 84.0%
4927131 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 36.0 4.55e-01 98.7% 72.2%
4998335 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 31.0 4.36e-01 96.0% 74.7%
5066321 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 37.0 4.68e-01 92.7% 76.7%
4445482 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 37.0 4.94e-01 90.7% 84.7%
5031401 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 37.0 5.08e-01 94.0% 91.3%
3462760 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 34.0 4.43e-01 100.0% 75.3%
5076571 101.1.2.92 alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.74 35.0 4.41e-01 92.7% 73.3%
3944118 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 38.0 4.91e-01 100.0% 84.4%
4964883 101.1.2.945 alpha arrays › HTH › HTH › winged helix domain › PF26491 0.72 36.0 4.28e-01 90.0% 70.0%
4965724 101.1.2.930 alpha arrays › HTH › HTH › winged helix domain › DUF7474 0.72 39.0 4.89e-01 96.7% 85.3%
4943350 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 35.0 4.26e-01 94.7% 71.7%
4927721 101.1.2.26 alpha arrays › HTH › HTH › winged helix domain › HxlR 0.70 37.0 4.21e-01 92.7% 67.0%
2719 101.1.2.26 alpha arrays › HTH › HTH › winged helix domain › HxlR 0.70 36.0 4.31e-01 87.3% 72.5%
5026287 101.1.2.26 alpha arrays › HTH › HTH › winged helix domain › HxlR 0.70 36.0 4.43e-01 86.7% 77.9%
140413 101.1.2.128 alpha arrays › HTH › HTH › winged helix domain › DUF2582 0.69 33.0 4.64e-01 100.0% 97.1%
5071963 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 33.0 4.52e-01 100.0% 94.3%
4975590 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 32.0 4.33e-01 92.0% 86.7%
4506467 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.68 33.0 4.47e-01 100.0% 90.7%
3717702 101.1.2.304 alpha arrays › HTH › HTH › winged helix domain › E3_UFM1_ligase 0.68 31.0 4.48e-01 98.7% 98.5%
5040212 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.67 37.0 4.21e-01 79.3% 70.9%
5000748 101.1.2.92 alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.67 31.0 4.48e-01 99.3% 98.5%
4992785 101.1.2.222 alpha arrays › HTH › HTH › winged helix domain › PH0730-like_N 0.67 39.0 4.60e-01 88.0% 81.9%
5073218 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 37.0 4.66e-01 93.3% 90.0%
3518226 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 33.0 3.56e-01 99.3% 56.0%
4946822 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 33.0 4.25e-01 92.7% 91.3%
3453675 101.1.2.304 alpha arrays › HTH › HTH › winged helix domain › E3_UFM1_ligase 0.62 31.0 3.55e-01 100.0% 61.7%
3279656 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.62 40.0 4.46e-01 84.0% 80.8%
4932125 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.59 33.0 3.85e-01 78.7% 77.1%
3508434 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 26.0 3.77e-01 98.7% 100.0%
4933524 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 34.0 4.08e-01 80.7% 90.0%
4058311 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.52 34.0 3.99e-01 90.7% 91.8%
D3 medium residues 353-413_562-579
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2rinA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.52 42.0 3.30e-01 91.1% 79.8%
D4 medium residues 414-561
PDB
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8bauA01 1.10.357.40 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › YbiA-like 0.89 70.0 6.45e-01 81.1% 97.2%
2b3wA00 1.10.357.40 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › YbiA-like 0.86 71.0 6.73e-01 85.1% 88.7%
4qs8A01 3.40.367.20 Alpha Beta › 3-Layer(aba) Sandwich › Hexokinase; domain 1 › 0.55 50.0 4.06e-01 99.3% 94.3%
4c2uA02 1.10.10.160 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.55 28.0 3.55e-01 95.3% 85.2%
3euoA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.54 33.0 3.30e-01 74.3% 57.3%
1za0A00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.51 37.0 3.20e-01 75.0% 94.2%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3180309 4308.1.1.1 a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.90 74.0 6.57e-01 85.1% 92.5%
3230342 4308.1.1.1 a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.90 74.0 6.43e-01 85.1% 83.8%
3515177 4308.1.1.0 a+b complex topology › YbiA-like › YbiA-like › YbiA-like 0.90 71.0 6.49e-01 81.1% 100.0%
3999784 4308.1.1.0 a+b complex topology › YbiA-like › YbiA-like › YbiA-like 0.90 73.0 6.64e-01 84.5% 98.4%
3230388 4308.1.1.1 a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.89 74.0 6.67e-01 85.8% 87.7%
3518372 4308.1.1.0 a+b complex topology › YbiA-like › YbiA-like › YbiA-like 0.89 71.0 6.49e-01 81.8% 100.0%
3789927 4308.1.1.1 a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.89 73.0 6.77e-01 85.1% 93.9%
3212620 4308.1.1.1 a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.88 75.0 6.69e-01 87.8% 100.0%
3218293 4308.1.1.1 a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.87 72.0 6.20e-01 85.1% 68.5%
3972372 4308.1.1.0 a+b complex topology › YbiA-like › YbiA-like › YbiA-like 0.87 73.0 6.81e-01 87.2% 100.0%
3432841 4308.1.1.1 a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.87 71.0 6.86e-01 83.8% 100.0%
3616731 4308.1.1.1 a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.86 71.0 6.98e-01 85.1% 88.0%
3797441 4308.1.1.0 a+b complex topology › YbiA-like › YbiA-like › YbiA-like 0.86 71.0 7.06e-01 85.1% 90.8%
3705063 4308.1.1.1 a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.86 68.0 6.92e-01 81.1% 100.0%
3999501 4308.1.1.1 a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.86 69.0 6.65e-01 82.4% 100.0%
3600506 4308.1.1.0 a+b complex topology › YbiA-like › YbiA-like › YbiA-like 0.86 68.0 6.86e-01 82.4% 98.0%
3264987 4308.1.1.1 a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.85 68.0 6.95e-01 82.4% 100.0%
3514172 4308.1.1.1 a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.85 71.0 6.78e-01 85.8% 97.6%
3279758 4308.1.1.1 a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.85 69.0 6.97e-01 83.8% 99.3%
3281506 4308.1.1.1 a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.85 69.0 6.92e-01 83.8% 98.0%
3620605 4308.1.1.1 a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.85 73.0 6.81e-01 88.5% 100.0%
3995458 4308.1.1.0 a+b complex topology › YbiA-like › YbiA-like › YbiA-like 0.84 61.0 6.39e-01 73.6% 97.8%
3800544 4308.1.1.0 a+b complex topology › YbiA-like › YbiA-like › YbiA-like 0.84 73.0 6.47e-01 91.2% 100.0%
3227587 4308.1.1.1 a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.83 70.0 6.48e-01 87.8% 92.9%
3515138 4308.1.1.0 a+b complex topology › YbiA-like › YbiA-like › YbiA-like 0.83 67.0 6.06e-01 83.1% 100.0%
3518206 4308.1.1.0 a+b complex topology › YbiA-like › YbiA-like › YbiA-like 0.81 66.0 6.62e-01 84.5% 100.0%
3616804 4308.1.1.1 a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.81 68.0 6.18e-01 87.8% 100.0%
3923757 4308.1.1.1 a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR 0.80 70.0 6.66e-01 91.2% 96.5%
3999783 4308.1.1.0 a+b complex topology › YbiA-like › YbiA-like › YbiA-like 0.77 69.0 6.02e-01 93.9% 95.7%
3518191 4308.1.1.0 a+b complex topology › YbiA-like › YbiA-like › YbiA-like 0.76 62.0 6.46e-01 84.5% 98.5%