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IMGVR_UViG_2667527400_000001-2667527400-2667995899
Arc-VirIMGVR_UViG_2667527400_000001-2667527400-2667995899
Identity
- Kingdom:
- archaea
Quality
90.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 446-574
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07510.17 best | GmrSD_C | 27.2 | 4.50e-06 | 90.7% | 66.2% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5004503 | 378.1.1.20 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › DUF1524 | 0.83 | 78.0 | 7.66e-01 | 97.7% | 93.3% |
| 3839081 | 378.1.1.20 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › DUF1524 | 0.83 | 76.0 | 7.37e-01 | 96.1% | 92.9% |
| 3839337 | 378.1.1.20 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › DUF1524 | 0.80 | 76.0 | 7.14e-01 | 100.0% | 90.7% |
| 4936804 | 378.1.1.20 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › DUF1524 | 0.78 | 72.0 | 6.71e-01 | 96.9% | 92.9% |
| 4938104 | 378.1.1.20 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › DUF1524 | 0.71 | 64.0 | 6.23e-01 | 99.2% | 89.3% |
| 3949147 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.70 | 65.0 | 5.83e-01 | 99.2% | 73.7% |
| 3386505 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.69 | 62.0 | 6.14e-01 | 97.7% | 91.1% |
| 3693567 | 5041.1.1.0 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C | 0.67 | 25.0 | 3.05e-01 | 96.1% | 51.1% |
D2
medium
residues 1-85_136-172_205-223
Domain cluster:
rep: MN270266.1__QGJ85862.1__X__00057__D1-84_233-255
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03235.20 best | GmrSD_N | 61.7 | 1.50e-16 | 54.6% | 32.0% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1xw3A01 | 3.90.1530.10 | Alpha Beta › Alpha-Beta Complex › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain | 0.56 | 36.0 | 4.22e-01 | 93.6% | 94.8% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3839086 | 876.1.1.4 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › DUF262 | 0.86 | 78.0 | 6.60e-01 | 93.6% | 100.0% |
| 5004501 | 876.1.1.4 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › DUF262 | 0.85 | 77.0 | 6.60e-01 | 95.0% | 100.0% |
| 3838650 | 876.1.1.4 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › DUF262 | 0.83 | 73.0 | 6.33e-01 | 91.5% | 100.0% |
| 3838337 | 876.1.1.4 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › DUF262 | 0.82 | 68.0 | 6.13e-01 | 85.8% | 100.0% |
| 5073612 | 876.1.1.1 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc | 0.61 | 42.0 | 4.83e-01 | 98.6% | 95.2% |
| 2387795 | 876.1.1.1 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc | 0.54 | 34.0 | 4.13e-01 | 95.0% | 100.0% |
| 4393138 | 876.1.1.0 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin | 0.53 | 41.0 | 4.35e-01 | 100.0% | 94.2% |
D3
medium
residues 86-135_173-204
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4k0dA00 | 1.20.120.1730 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.60 | 38.0 | 3.11e-01 | 100.0% | 36.4% |
| 3iqtA01 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.57 | 39.0 | 3.42e-01 | 92.7% | 49.1% |
| 5mmjo00 | 1.10.287.10 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding | 0.57 | 36.0 | 3.81e-01 | 100.0% | 72.0% |
| 3qnfA04 | 1.10.3480.20 | Mainly Alpha › Orthogonal Bundle › TorD-like › | 0.56 | 46.0 | 3.66e-01 | 92.7% | 67.8% |
| 3u9jA00 | 1.20.120.520 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like | 0.55 | 36.0 | 2.93e-01 | 100.0% | 35.0% |
| 4etrB00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.55 | 48.0 | 4.26e-01 | 100.0% | 73.0% |
| 5grqA00 | 1.10.8.810 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Daxx helical bundle domain | 0.54 | 46.0 | 4.49e-01 | 96.3% | 93.3% |
| 2kvcA01 | 1.10.150.430 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF3349, helical bundle | 0.52 | 35.0 | 3.50e-01 | 70.7% | 76.1% |
| 3czbA01 | 2.40.40.10 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain | 0.52 | 41.0 | 3.31e-01 | 87.8% | 91.8% |
| 1ywmA02 | 1.20.1270.150 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Surface Active Protein | 0.51 | 36.0 | 3.77e-01 | 86.6% | 80.3% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3603132 | 633.12.1.0 ↗ | alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like | 0.62 | 43.0 | 4.36e-01 | 91.5% | 72.5% |
| 3724806 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.59 | 53.0 | 3.95e-01 | 98.8% | 86.8% |
| 3491715 | 632.6.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit | 0.58 | 41.0 | 4.22e-01 | 74.4% | 96.2% |
| 4602773 | 611.9.1.4 ↗ | alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain › Rx_N | 0.58 | 51.0 | 4.36e-01 | 100.0% | 88.9% |
| 3723178 | 192.8.1.35 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › DUF6594 | 0.57 | 42.0 | 4.11e-01 | 100.0% | 71.1% |
| 3405478 | 633.23.1.22 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL | 0.57 | 51.0 | 4.35e-01 | 100.0% | 88.1% |
| 3833190 | 633.4.1.1 ↗ | alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI | 0.56 | 50.0 | 4.11e-01 | 100.0% | 69.8% |
| 4030027 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.56 | 43.0 | 4.20e-01 | 81.7% | 91.1% |
| 2133274 | 611.10.1.1 ↗ | alpha bundles › N-cbl like › DAXX helical bundle domain › DAXX helical bundle domain › Daxx | 0.55 | 47.0 | 4.66e-01 | 97.6% | 96.5% |
| 3315159 | 633.4.1.1 ↗ | alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI | 0.54 | 49.0 | 3.93e-01 | 100.0% | 66.3% |
| 3719985 | 601.14.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Hemerythrin › Hemerythrin | 0.54 | 47.0 | 4.39e-01 | 97.6% | 88.6% |
| 3894118 | 5050.1.1.4 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Nucleoside_tran | 0.53 | 46.0 | 3.63e-01 | 100.0% | 56.8% |
| 3865887 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.53 | 45.0 | 4.52e-01 | 95.1% | 88.2% |
| 3521510 | 192.7.1.73 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › PF31020 | 0.51 | 46.0 | 4.09e-01 | 95.1% | 84.5% |
D4
medium
residues 229-422
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1iqpA03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.61 | 31.0 | 4.27e-01 | 78.4% | 100.0% |
| 3hzjA03 | 1.10.472.80 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Ypt/Rab-GAP domain of gyp1p, domain 3 | 0.60 | 40.0 | 4.55e-01 | 74.2% | 88.6% |
| 1werA01 | 1.10.506.10 | Mainly Alpha › Orthogonal Bundle › GTPase Activation - p120GAP; domain 1 › GTPase Activation - p120gap; domain 1 | 0.52 | 27.0 | 2.86e-01 | 93.3% | 51.7% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3630595 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.57 | 45.0 | 4.02e-01 | 83.5% | 78.4% |
| 3330798 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.56 | 44.0 | 3.82e-01 | 83.0% | 80.0% |
| 3829766 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.52 | 41.0 | 3.75e-01 | 83.5% | 85.6% |
| 3475067 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.52 | 42.0 | 3.62e-01 | 84.5% | 83.3% |