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IMGVR_UViG_2667528052_000001-2667528052-2670592865
Arc-VirIMGVR_UViG_2667528052_000001-2667528052-2670592865
Identity
- Kingdom:
- archaea
Quality
83.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-50
Domain cluster:
rep: OR521087.1__WNO28629.1__SEA_MADKILLAH_45__00045__D6-48
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3anwA02 | 3.40.5.50 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › | 0.79 | 70.0 | 6.41e-01 | 100.0% | 82.8% |
| 2hjqA01 | 3.40.5.20 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › YqbF domain | 0.72 | 59.0 | 5.95e-01 | 100.0% | 93.5% |
| 2e9xB01 | 3.40.5.50 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › | 0.72 | 62.0 | 5.51e-01 | 100.0% | 71.2% |
| 3hqxA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.67 | 58.0 | 4.46e-01 | 100.0% | 47.6% |
| 1jb0D00 | 3.30.1470.10 | Alpha Beta › 2-Layer Sandwich › Photosystem 1 Reaction Centre Subunit Ii; Chain: D; › Photosystem I PsaD, reaction center subunit II | 0.66 | 53.0 | 3.94e-01 | 100.0% | 39.1% |
| 3h8uA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.66 | 56.0 | 4.15e-01 | 100.0% | 41.8% |
| 3bcwA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.66 | 56.0 | 4.34e-01 | 100.0% | 47.1% |
| 2i45D00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.64 | 54.0 | 4.29e-01 | 100.0% | 49.5% |
| 3myxB01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.64 | 55.0 | 4.08e-01 | 100.0% | 40.2% |
| 2q30A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.63 | 52.0 | 4.34e-01 | 100.0% | 55.7% |
| 3agjF01 | 2.30.30.870 | Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A | 0.63 | 49.0 | 3.72e-01 | 93.3% | 88.2% |
| 3es4A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.63 | 52.0 | 4.01e-01 | 100.0% | 42.2% |
| 1mbyA00 | 2.40.50.930 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.62 | 45.0 | 3.92e-01 | 82.2% | 73.3% |
| 2yz2B00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 44.0 | 2.80e-01 | 84.4% | 61.6% |
| 5k1rA01 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.60 | 48.0 | 3.12e-01 | 95.6% | 79.1% |
| 5h5oA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.60 | 49.0 | 3.72e-01 | 100.0% | 45.6% |
| 2zuoA09 | 2.30.30.570 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 47.0 | 4.31e-01 | 95.6% | 95.2% |
| 2vm9A01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.58 | 45.0 | 3.36e-01 | 100.0% | 51.3% |
| 2fyiC01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.57 | 39.0 | 3.00e-01 | 77.8% | 37.0% |
| 4k4kA02 | 2.60.40.2630 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 44.0 | 3.34e-01 | 95.6% | 96.9% |
| 4dzdA02 | 3.30.70.1210 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 2 | 0.56 | 45.0 | 3.46e-01 | 100.0% | 95.9% |
| 7wdtA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.54 | 42.0 | 3.15e-01 | 100.0% | 54.0% |
| 1n91A00 | 3.30.1200.10 | Alpha Beta › 2-Layer Sandwich › Conserved Hypothetical Protein Mth637; Chain: A; › YggU-like | 0.53 | 37.0 | 2.98e-01 | 80.0% | 84.3% |
| 1nz8A00 | 3.30.70.940 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain | 0.52 | 44.0 | 3.36e-01 | 100.0% | 84.9% |
| 1kqfA02 | 3.40.50.740 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 36.0 | 2.44e-01 | 82.2% | 88.7% |
| 3vzhA00 | 3.30.70.2660 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 40.0 | 2.82e-01 | 100.0% | 68.6% |
| 4huqA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 37.0 | 2.41e-01 | 88.9% | 15.5% |
ECOD (51)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4982789 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.89 | 81.0 | 7.09e-01 | 100.0% | 70.8% |
| 4994655 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.84 | 75.0 | 7.28e-01 | 100.0% | 96.0% |
| 4935547 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.82 | 74.0 | 7.18e-01 | 100.0% | 94.0% |
| 4981952 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.82 | 75.0 | 7.21e-01 | 100.0% | 90.0% |
| 4956746 | 4076.3.1.5 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › Gins51_C | 0.82 | 73.0 | 7.05e-01 | 97.8% | 94.0% |
| 3407377 | 4076.3.1.9 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › PSF1_C | 0.81 | 72.0 | 6.57e-01 | 100.0% | 79.7% |
| 5045837 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.81 | 73.0 | 6.59e-01 | 100.0% | 78.3% |
| 5044171 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.81 | 73.0 | 6.24e-01 | 100.0% | 67.1% |
| 3929096 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.81 | 70.0 | 6.85e-01 | 100.0% | 94.0% |
| 4304386 | 4076.3.1.3 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › SLD5_C | 0.80 | 69.0 | 6.73e-01 | 100.0% | 94.0% |
| 4404714 | 4076.3.1.9 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › PSF1_C | 0.80 | 70.0 | 6.66e-01 | 100.0% | 88.7% |
| 4979633 | 4076.3.1.8 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › PSF2_N | 0.80 | 72.0 | 6.32e-01 | 100.0% | 72.3% |
| 4932084 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.80 | 70.0 | 6.84e-01 | 100.0% | 94.0% |
| 5069341 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.80 | 70.0 | 6.78e-01 | 100.0% | 94.0% |
| 4951589 | 4076.3.1.5 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › Gins51_C | 0.79 | 70.0 | 6.83e-01 | 100.0% | 94.0% |
| 5044096 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.79 | 69.0 | 6.73e-01 | 97.8% | 92.0% |
| 5028408 | 4076.3.1.5 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › Gins51_C | 0.79 | 69.0 | 6.72e-01 | 97.8% | 94.0% |
| 4973337 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.79 | 70.0 | 6.54e-01 | 100.0% | 85.5% |
| 5049679 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.79 | 70.0 | 6.36e-01 | 100.0% | 78.3% |
| 5019734 | 4076.3.1.5 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › Gins51_C | 0.79 | 70.0 | 6.75e-01 | 100.0% | 94.0% |
| 5055750 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.77 | 68.0 | 6.61e-01 | 100.0% | 94.0% |
| 4956745 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.77 | 68.0 | 6.58e-01 | 100.0% | 94.0% |
| 4358525 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.77 | 69.0 | 6.69e-01 | 100.0% | 90.0% |
| 5031576 | 4076.3.1.8 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › PSF2_N | 0.77 | 67.0 | 6.27e-01 | 97.8% | 83.6% |
| 5069643 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.77 | 68.0 | 6.45e-01 | 100.0% | 88.7% |
| 3265780 | 3529.1.1.1 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault | 0.76 | 66.0 | 5.99e-01 | 100.0% | 73.3% |
| 5011186 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.76 | 66.0 | 6.06e-01 | 100.0% | 76.7% |
| 4975580 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.76 | 67.0 | 6.10e-01 | 100.0% | 78.3% |
| 3977412 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.74 | 61.0 | 5.97e-01 | 97.8% | 98.0% |
| 4081421 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.73 | 64.0 | 6.25e-01 | 100.0% | 94.0% |
| 4230268 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.73 | 63.0 | 6.37e-01 | 97.8% | 100.0% |
| 3929869 | 4076.3.1.8 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › PSF2_N | 0.73 | 63.0 | 5.93e-01 | 100.0% | 85.5% |
| 3918340 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.72 | 60.0 | 5.29e-01 | 97.8% | 81.4% |
| 3759402 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 54.0 | 4.93e-01 | 100.0% | 90.8% |
| 4169249 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.65 | 53.0 | 5.27e-01 | 100.0% | 93.8% |
| 5025099 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.65 | 54.0 | 5.26e-01 | 97.8% | 88.0% |
| 5037411 | 304.22.1.0 ↗ | a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain | 0.64 | 53.0 | 4.25e-01 | 100.0% | 66.0% |
| 3557677 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.63 | 52.0 | 4.65e-01 | 100.0% | 88.6% |
| 3608895 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.61 | 51.0 | 3.94e-01 | 100.0% | 50.9% |
| 3613140 | 1189.1.1.0 ↗ | alpha bundles › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor | 0.60 | 44.0 | 2.61e-01 | 82.2% | 87.3% |
| 3494269 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.59 | 48.0 | 2.95e-01 | 100.0% | 16.2% |
| 2063085 | 10.12.1.1 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding | 0.59 | 48.0 | 3.53e-01 | 100.0% | 38.2% |
| 3613430 | 10.12.1.1 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding | 0.59 | 48.0 | 3.67e-01 | 100.0% | 45.0% |
| 3717688 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.59 | 48.0 | 3.49e-01 | 100.0% | 37.2% |
| 3492162 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.58 | 47.0 | 3.43e-01 | 100.0% | 37.3% |
| 5048531 | 821.1.1.4 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF123 | 0.58 | 47.0 | 3.39e-01 | 100.0% | 46.0% |
| 3215294 | 10.12.1.97 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › CNBH_CNNM2_C | 0.57 | 46.0 | 3.24e-01 | 100.0% | 43.0% |
| 3455842 | 810.1.1.2 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT | 0.54 | 43.0 | 3.34e-01 | 97.8% | 95.7% |
| 3210795 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.52 | 41.0 | 2.68e-01 | 100.0% | 46.8% |
| None | — | 0.52 | 38.0 | 2.46e-01 | 88.9% | 15.4% | |
| 4498777 | 2004.1.1.417 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21 | 0.52 | 38.0 | 2.43e-01 | 88.9% | 14.9% |