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IMGVR_UViG_2667528052_000001-2667528052-2670592880

Arc-Vir

IMGVR_UViG_2667528052_000001-2667528052-2670592880

Identity

Kingdom:
archaea

Quality

82.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-46
PDB
Domain cluster: representative
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2y39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.80 59.0 4.25e-01 77.3% 33.6%
2ql2C00 4.10.280.10 Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain 0.78 65.0 5.89e-01 90.9% 70.7%
4gx0A01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.77 61.0 4.60e-01 86.4% 75.7%
1bccA02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.76 63.0 4.04e-01 93.2% 51.5%
1p5jA01 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.75 59.0 3.73e-01 88.6% 30.0%
5fmgF00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.74 59.0 3.69e-01 90.9% 17.4%
5fmgA00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.74 61.0 3.86e-01 93.2% 19.2%
4evxA00 1.10.1740.240 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › 0.74 64.0 5.02e-01 100.0% 45.4%
3mvpA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.74 63.0 4.40e-01 100.0% 48.3%
1rypL00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.73 61.0 3.87e-01 93.2% 19.8%
2jlnA00 1.10.4160.10 Mainly Alpha › Orthogonal Bundle › Hydantoin permease › Hydantoin permease 0.72 58.0 3.30e-01 93.2% 8.4%
2fsjA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.72 61.0 4.35e-01 100.0% 56.5%
3dplC03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 61.0 4.93e-01 95.5% 50.6%
3nbiA01 1.10.8.1020 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecQ-mediated genome instability protein 1, N-terminal domain 0.72 53.0 4.91e-01 81.8% 91.4%
3bosA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.71 50.0 4.36e-01 75.0% 49.3%
1h99A02 1.10.1790.10 Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain 0.71 59.0 4.44e-01 93.2% 87.7%
2hszA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.70 50.0 4.12e-01 75.0% 46.7%
3b0bC02 6.10.130.30 Special › Helix non-globular › GTP Cyclohydrolase I; Chain A, domain 1 › 0.70 55.0 5.55e-01 93.2% 93.0%
6muwB00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.69 56.0 3.57e-01 93.2% 18.3%
5yjlD01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.68 53.0 3.68e-01 84.1% 37.3%
1jhfA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 48.0 4.15e-01 81.8% 47.8%
1u84A00 1.10.340.20 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain 0.68 48.0 4.00e-01 84.1% 42.0%
3td9A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.68 55.0 3.54e-01 93.2% 20.1%
3jyoA01 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.68 48.0 3.39e-01 77.3% 23.7%
6muwM00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.67 57.0 3.66e-01 95.5% 44.6%
3lynB00 1.20.150.10 Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein 0.67 59.0 4.21e-01 97.7% 72.6%
3k6hA01 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.66 58.0 3.91e-01 100.0% 80.8%
4ye6A01 1.10.8.1290 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1, domain 1 0.66 54.0 4.12e-01 90.9% 67.3%
3h36A00 1.10.10.400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain 0.65 54.0 4.50e-01 93.2% 56.4%
1gvfB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.64 54.0 3.31e-01 93.2% 21.5%
2ctoA01 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.64 47.0 4.38e-01 88.6% 60.7%
2gptA03 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.64 52.0 3.58e-01 93.2% 29.6%
6muwK00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.64 53.0 3.51e-01 95.5% 35.4%
2cg5B00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.63 45.0 3.91e-01 79.5% 47.9%
1a3qA01 2.60.40.340 Mainly Beta › Sandwich › Immunoglobulin-like › Rel homology domain (RHD), DNA-binding domain 0.63 49.0 3.33e-01 88.6% 22.3%
2fnaA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 42.0 3.64e-01 70.5% 42.5%
5oklA01 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.62 51.0 3.82e-01 95.5% 38.6%
1dj8A00 1.10.890.10 Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › HNS-dependent expression A 0.62 44.0 3.75e-01 88.6% 44.3%
2ra1A01 1.20.58.790 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 56.0 4.25e-01 100.0% 44.9%
3mwmA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 43.0 3.68e-01 79.5% 45.3%
5lb3B02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 51.0 3.22e-01 95.5% 72.4%
1cjaA02 1.10.1070.11 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain 0.58 45.0 3.08e-01 88.6% 26.0%
2p5kA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 40.0 3.70e-01 77.3% 71.4%
1f45B00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.57 51.0 3.57e-01 100.0% 47.4%
3eoqB02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.57 45.0 3.01e-01 88.6% 26.8%
7px0A01 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.57 43.0 3.35e-01 93.2% 93.3%
2aj6A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 46.0 3.40e-01 90.9% 34.2%
4iejA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.57 43.0 3.61e-01 86.4% 48.0%
1kxpD03 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.55 47.0 3.81e-01 100.0% 52.3%
4gp6A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 50.0 3.29e-01 100.0% 31.6%
5u3fB01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.54 45.0 3.18e-01 93.2% 57.1%
3me5A01 1.10.260.140 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › 0.52 38.0 3.51e-01 84.1% 95.3%
5i0hA02 1.20.5.4820 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.51 41.0 3.62e-01 97.7% 59.7%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5077679 101.1.11.0 alpha arrays › HTH › HTH › Ribbon-helix-helix 0.76 64.0 5.58e-01 90.9% 84.6%
4950231 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.74 64.0 4.97e-01 95.5% 81.1%
3512410 377.1.1.23 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › SIX1_SD 0.74 60.0 4.45e-01 95.5% 34.2%
3216262 377.1.1.23 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › SIX1_SD 0.73 60.0 4.40e-01 95.5% 34.2%
3690556 148.1.1.0 alpha arrays › Histone-like › Histone-related › Histone 0.73 60.0 5.44e-01 93.2% 71.7%
3858057 101.42.1.1 alpha arrays › HTH › CC2 domain in SUN proteins › CC2 domain in SUN proteins › HTH_SUN2 0.72 58.0 4.87e-01 93.2% 52.0%
3661711 592.1.1.1 alpha arrays › PWI domain-like › PWI domain › PWI domain › PWI 0.72 59.0 4.87e-01 93.2% 82.5%
5000704 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 57.0 4.64e-01 95.5% 45.6%
3962579 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.71 62.0 4.26e-01 95.5% 52.9%
4520031 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.71 57.0 3.57e-01 88.6% 80.8%
3601617 2006.1.1.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.70 58.0 3.52e-01 93.2% 14.8%
3394799 5076.1.1.1 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.70 53.0 3.29e-01 86.4% 14.0%
5053903 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 55.0 4.02e-01 88.6% 33.3%
4517192 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.69 58.0 3.91e-01 100.0% 23.2%
5013811 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.68 48.0 4.47e-01 77.3% 60.0%
4407077 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.68 56.0 4.61e-01 93.2% 92.5%
4858006 191.1.1.11 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_7 0.67 55.0 4.78e-01 100.0% 58.4%
5039745 2003.1.1.36 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › 3HCDH_N 0.67 59.0 3.64e-01 95.5% 30.2%
5035624 101.1.2.54 alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R 0.67 56.0 4.51e-01 93.2% 51.8%
3987997 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 56.0 4.79e-01 97.7% 58.7%
4889887 4964.1.1.1 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A 0.67 54.0 3.81e-01 93.2% 39.7%
4562263 3435.1.1.1 a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › RdgC 0.66 53.0 3.23e-01 90.9% 13.5%
3724068 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 46.0 4.28e-01 72.7% 60.0%
None 0.65 55.0 3.25e-01 93.2% 12.7%
4187720 206.1.3.2 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › GARS_A 0.65 49.0 3.06e-01 84.1% 14.2%
4995581 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.65 45.0 3.56e-01 77.3% 33.0%
3814136 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 47.0 4.40e-01 81.8% 63.6%
3909922 101.1.1.12 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc3_2 0.63 45.0 4.33e-01 75.0% 66.0%
3550406 541.1.1.0 alpha duplicates or obligate multimers › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit 0.63 50.0 4.85e-01 88.6% 98.0%
4961900 101.1.1.187 alpha arrays › HTH › HTH › Three-helical HTH › HTH_33 0.63 43.0 3.74e-01 75.0% 42.7%
3908865 101.1.2.536 alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc3_2 0.63 44.0 4.14e-01 75.0% 60.0%
3426642 375.1.1.96 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › YABBY 0.63 48.0 4.71e-01 95.5% 80.0%
4014657 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.62 45.0 4.18e-01 77.3% 61.8%
4994794 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 43.0 3.70e-01 75.0% 42.7%
3326259 1091.1.1.0 alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 0.61 43.0 4.21e-01 77.3% 68.0%
3477670 190.1.1.0 alpha arrays › HMG-box-like › HMG-box › HMG-box 0.60 45.0 4.12e-01 90.9% 63.1%
3503648 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.59 45.0 4.27e-01 100.0% 71.7%
3740014 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.59 41.0 3.56e-01 77.3% 47.1%
3933926 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.58 45.0 4.03e-01 95.5% 58.5%
3955434 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.58 39.0 3.90e-01 93.2% 66.0%
5070167 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.58 42.0 3.93e-01 77.3% 61.8%
3606798 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.58 46.0 4.27e-01 90.9% 69.1%
5083383 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 43.0 3.88e-01 84.1% 58.3%
5070907 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 37.0 3.77e-01 77.3% 62.2%
3744764 2004.1.1.140 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Zeta_toxin 0.57 43.0 2.62e-01 81.8% 13.3%
5053360 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.56 42.0 3.36e-01 84.1% 41.2%
3709551 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.56 43.0 3.95e-01 86.4% 61.7%
4274627 101.1.1.266 alpha arrays › HTH › HTH › Three-helical HTH › Transposase_mut 0.55 41.0 3.76e-01 79.5% 61.7%
5006610 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.53 38.0 3.59e-01 95.5% 63.3%