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IMGVR_UViG_2681812914_000001-2681812914-2682132096
Arc-VirIMGVR_UViG_2681812914_000001-2681812914-2682132096
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-74
Domain cluster:
rep: MG550112__QAS68890.1__HFTV1-gp57__00057__D7-62
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF26450.2 best | DUF8129 | 56.8 | 2.40e-15 | 95.2% | 91.2% |
CATH (44)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2guzB00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.73 | 55.0 | 5.45e-01 | 79.4% | 93.8% |
| 1aa7A02 | 1.10.10.180 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Influenza matrix protein M1, N-terminal subdomain 2 | 0.73 | 62.0 | 5.86e-01 | 98.4% | 85.9% |
| 2ar0A01 | 1.20.1260.30 | Mainly Alpha › Up-down Bundle › Ferritin › N6 adenine-specific DNA methyltransferase, N-terminal domain | 0.72 | 50.0 | 3.81e-01 | 73.0% | 91.3% |
| 6cw0A00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.71 | 50.0 | 4.21e-01 | 74.6% | 80.8% |
| 2vj4A01 | 1.10.10.2060 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.70 | 63.0 | 5.55e-01 | 100.0% | 72.2% |
| 1vdyA00 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.69 | 61.0 | 4.71e-01 | 100.0% | 50.7% |
| 1bucA01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.69 | 58.0 | 4.79e-01 | 100.0% | 78.9% |
| 5yjlB01 | 3.30.460.30 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Glutamyl-tRNA reductase, N-terminal domain | 0.69 | 60.0 | 4.52e-01 | 100.0% | 82.0% |
| 5dikA00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.68 | 54.0 | 4.56e-01 | 90.5% | 62.5% |
| 2wy4A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.68 | 56.0 | 4.43e-01 | 95.2% | 71.2% |
| 8gpvA01 | 1.25.60.10 | Mainly Alpha › Alpha Horseshoe › MgtE N-terminal fold › MgtE N-terminal domain-like | 0.67 | 58.0 | 4.61e-01 | 96.8% | 69.0% |
| 2qyuA02 | 1.25.40.300 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Putative secreted effector protein | 0.67 | 57.0 | 4.08e-01 | 98.4% | 43.6% |
| 5n13A00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.66 | 49.0 | 4.04e-01 | 77.8% | 79.6% |
| 3akjA02 | 1.10.1070.20 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › | 0.66 | 57.0 | 4.04e-01 | 100.0% | 77.6% |
| 4mdvB03 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.66 | 54.0 | 4.81e-01 | 92.1% | 75.8% |
| 2xppA00 | 1.20.930.10 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0.64 | 55.0 | 4.36e-01 | 98.4% | 62.8% |
| 2raeA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.63 | 53.0 | 4.30e-01 | 100.0% | 77.4% |
| 1dvpA01 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.63 | 55.0 | 4.31e-01 | 100.0% | 55.7% |
| 2nrlA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.63 | 52.0 | 4.09e-01 | 96.8% | 57.2% |
| 1c5aA00 | 1.20.91.20 | Mainly Alpha › Up-down Bundle › Influenza Virus Matrix Protein; Chain A, domain 1 › Anaphylotoxins (complement system) | 0.62 | 46.0 | 4.56e-01 | 79.4% | 76.9% |
| 3eabE00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.61 | 49.0 | 4.50e-01 | 90.5% | 93.0% |
| 2gomA00 | 1.10.10.1270 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sbi, C3 binding domain IV | 0.61 | 48.0 | 4.90e-01 | 92.1% | 90.2% |
| 2zwiA01 | 3.40.50.11120 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Sialyltransferase, N-terminal GT-B Rossman nucleotide-binding domain | 0.61 | 50.0 | 3.48e-01 | 93.7% | 45.9% |
| 2vwaA00 | 1.20.58.1330 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Plasmodium falciparum UIS3 membrane protein | 0.60 | 51.0 | 4.47e-01 | 96.8% | 97.0% |
| 4abnA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.60 | 53.0 | 3.44e-01 | 100.0% | 27.6% |
| 3axsA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.60 | 51.0 | 3.27e-01 | 98.4% | 87.0% |
| 4n1yB00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.59 | 47.0 | 3.36e-01 | 93.7% | 48.5% |
| 3iieB03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.59 | 44.0 | 3.92e-01 | 77.8% | 80.0% |
| 6kmjA00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.59 | 52.0 | 4.29e-01 | 98.4% | 58.0% |
| 4n4gA01 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.58 | 50.0 | 4.21e-01 | 98.4% | 58.6% |
| 2vixA03 | 1.20.1280.240 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.58 | 48.0 | 4.13e-01 | 100.0% | 85.0% |
| 4epzA00 | 1.25.40.810 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › UpxZ | 0.58 | 48.0 | 3.78e-01 | 100.0% | 53.9% |
| 1blwC00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.58 | 46.0 | 3.62e-01 | 90.5% | 75.2% |
| 3oqiA00 | 3.40.50.11710 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cyclodipeptide synthase | 0.58 | 45.0 | 3.16e-01 | 88.9% | 35.6% |
| 2c0kB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.57 | 47.0 | 3.70e-01 | 96.8% | 75.8% |
| 5hayA02 | 1.25.40.440 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Nucleoporin, helical domain, central subdomain | 0.57 | 48.0 | 4.50e-01 | 98.4% | 78.5% |
| 2i6hA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.56 | 46.0 | 4.09e-01 | 93.7% | 65.6% |
| 3w1oA00 | 3.40.1760.20 | Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical protein yfbM fold › | 0.56 | 44.0 | 3.75e-01 | 93.7% | 49.6% |
| 5fhiA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.56 | 47.0 | 3.77e-01 | 100.0% | 70.5% |
| 3ajmB02 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.55 | 48.0 | 3.76e-01 | 96.8% | 58.6% |
| 1hqoA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.55 | 46.0 | 3.78e-01 | 100.0% | 79.4% |
| 1ithA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.55 | 41.0 | 3.37e-01 | 88.9% | 56.0% |
| 3hmfA00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.53 | 45.0 | 3.71e-01 | 98.4% | 52.6% |
| 3iu5A00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.51 | 42.0 | 3.50e-01 | 92.1% | 68.4% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3216022 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.76 | 68.0 | 4.56e-01 | 98.4% | 41.3% |
| 3784245 | 109.4.1.909 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DOP1_C | 0.76 | 69.0 | 4.70e-01 | 100.0% | 35.3% |
| 3235982 | 109.4.1.266 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › XMAP215_CLASP_TOG | 0.76 | 65.0 | 3.78e-01 | 100.0% | 27.8% |
| 4024692 | 109.4.1.1201 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RESC6 | 0.76 | 68.0 | 4.06e-01 | 100.0% | 18.0% |
| 3588874 | 604.15.1.0 ↗ | alpha bundles › Spectrin repeat-like › Efb C-domain-like › Efb C-domain-like | 0.75 | 55.0 | 6.03e-01 | 87.3% | 98.0% |
| 3620046 | 109.4.1.1637 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › U3_assoc_6, UTP6_C | 0.71 | 63.0 | 3.64e-01 | 100.0% | 16.3% |
| 4025757 | 603.1.1.6 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin_2 | 0.71 | 57.0 | 3.87e-01 | 87.3% | 46.4% |
| 4629803 | 531.2.1.3 ↗ | alpha arrays › Domains of FliG › Middle domain of FliG › Middle domain of FliG › FliG_M, FliG_N | 0.71 | 51.0 | 3.72e-01 | 84.1% | 27.2% |
| 3997708 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.70 | 61.0 | 4.84e-01 | 100.0% | 85.9% |
| 3595697 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.70 | 61.0 | 3.56e-01 | 100.0% | 22.9% |
| 3271522 | 109.4.1.413 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FANCI_S2,FANCI_HD2 | 0.68 | 58.0 | 3.41e-01 | 100.0% | 13.8% |
| 3218070 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.67 | 59.0 | 3.91e-01 | 100.0% | 26.9% |
| 3684300 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.67 | 59.0 | 3.90e-01 | 98.4% | 26.7% |
| 4369072 | 109.4.1.940 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_Slam | 0.66 | 56.0 | 4.36e-01 | 96.8% | 42.9% |
| 406536 | 206.1.1.23 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › HipA_C | 0.66 | 53.0 | 3.52e-01 | 93.7% | 52.0% |
| 3347410 | 109.4.1.189 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 | 0.66 | 56.0 | 4.49e-01 | 100.0% | 47.4% |
| None | — | 0.66 | 61.0 | 3.83e-01 | 100.0% | 22.3% | |
| 4032834 | 604.5.1.69 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PF28025 | 0.66 | 53.0 | 3.83e-01 | 85.7% | 48.5% |
| 3843378 | 109.4.1.1811 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_TT21_2nd, ARM_TT21_N | 0.65 | 60.0 | 3.72e-01 | 100.0% | 30.2% |
| 3933743 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.65 | 58.0 | 3.90e-01 | 100.0% | 31.5% |
| 3723566 | 206.1.1.41 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › DUF3669 | 0.65 | 54.0 | 3.42e-01 | 95.2% | 38.5% |
| 3928069 | 109.4.1.917 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_TT21_N | 0.64 | 58.0 | 4.48e-01 | 100.0% | 67.4% |
| 3781066 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.63 | 45.0 | 4.76e-01 | 74.6% | 100.0% |
| 3250614 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.62 | 54.0 | 3.64e-01 | 95.2% | 35.5% |
| 3713379 | 109.4.1.22 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N | 0.62 | 51.0 | 3.30e-01 | 95.2% | 20.3% |
| 4943885 | 873.1.1.1 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R | 0.62 | 51.0 | 4.07e-01 | 96.8% | 72.9% |
| 4510352 | 110.1.1.22 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › SH3BP4_C, DEATH_SH3BP4 | 0.62 | 53.0 | 4.03e-01 | 93.7% | 72.9% |
| 4021910 | 101.1.2.519 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7791 | 0.62 | 46.0 | 3.19e-01 | 81.0% | 33.6% |
| 3613860 | 601.1.2.105 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › Transmemb_17 | 0.59 | 50.0 | 3.92e-01 | 96.8% | 57.9% |
| 3556381 | 3755.3.1.530 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › PPP1R21_helical | 0.59 | 51.0 | 3.34e-01 | 96.8% | 40.0% |
| 4025746 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.58 | 48.0 | 3.56e-01 | 93.7% | 71.2% |
| 3692854 | 109.4.1.1356 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2, PPR_3, PPR_long | 0.57 | 47.0 | 3.70e-01 | 95.2% | 46.9% |