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IMGVR_UViG_2681812966_000001-2681812966-2682307649

Arc-Vir

IMGVR_UViG_2681812966_000001-2681812966-2682307649

Identity

Kingdom:
archaea

Quality

75.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 37-126
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1n91A00 3.30.1200.10 Alpha Beta › 2-Layer Sandwich › Conserved Hypothetical Protein Mth637; Chain: A; › YggU-like 0.67 51.0 4.79e-01 80.0% 77.8%
3im8A02 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.67 38.0 4.15e-01 70.0% 68.5%
4ctaA02 3.30.70.2860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 38.0 4.16e-01 70.0% 68.0%
4u9rA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 45.0 4.66e-01 74.4% 75.6%
2j0wA03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.66 45.0 4.70e-01 85.6% 77.8%
5mmiU01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.64 48.0 5.01e-01 91.1% 87.8%
3jcmH04 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.64 37.0 3.92e-01 75.6% 64.9%
3c1mA02 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.63 51.0 4.17e-01 86.7% 88.4%
6lpnA04 3.30.70.2740 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 40.0 3.96e-01 76.7% 60.0%
2e29A01 3.30.70.2280 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 39.0 4.20e-01 70.0% 75.0%
3tviA02 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.61 49.0 4.06e-01 86.7% 86.8%
6lxgA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.61 35.0 3.78e-01 70.0% 67.1%
4mt1A07 3.30.70.1440 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain 0.61 43.0 4.13e-01 77.8% 64.7%
6hhnA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 40.0 4.00e-01 70.0% 65.2%
6u6pA01 3.30.1070.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle; Chain A › Cell division topological specificity factor MinE 0.59 42.0 4.43e-01 75.6% 100.0%
1gkxA01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.59 51.0 4.32e-01 96.7% 88.7%
3ossD00 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.59 41.0 3.44e-01 73.3% 89.2%
4hl9A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 43.0 4.28e-01 78.9% 100.0%
3zigA00 3.30.110.150 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › SepF-like protein 0.57 40.0 4.17e-01 86.7% 80.5%
4djbA00 3.30.70.2870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Mastadenovirus E4 ORF3 0.57 44.0 4.01e-01 81.1% 98.3%
3i24B00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.57 48.0 4.20e-01 97.8% 61.9%
5w7tA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 43.0 4.22e-01 81.1% 75.3%
2gffA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 42.0 4.12e-01 77.8% 97.9%
2qziA00 3.40.1720.10 Alpha Beta › 3-Layer(aba) Sandwich › Streptococcus thermophilus LMG 18311 protein like › Streptococcus thermophilus LMG 18311 protein like 0.56 47.0 4.61e-01 93.3% 96.0%
2op5B01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 41.0 4.04e-01 77.8% 100.0%
3bm7A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 41.0 3.95e-01 78.9% 90.6%
1z2zA02 3.30.70.3160 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 44.0 4.46e-01 84.4% 90.0%
6zxbA02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.55 42.0 3.62e-01 81.1% 73.6%
2anrA02 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.55 36.0 3.81e-01 73.3% 77.3%
1sqeA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 42.0 4.09e-01 81.1% 96.0%
1mkfA02 2.60.40.1340 Mainly Beta › Sandwich › Immunoglobulin-like › Chemokine-binding protein M3-like 0.55 44.0 3.63e-01 88.9% 86.6%
4c98A01 3.30.70.1890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 41.0 3.92e-01 81.1% 96.2%
4bxiA00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.54 45.0 3.93e-01 94.4% 82.9%
2uvaG03 3.30.70.3320 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 35.0 3.38e-01 83.3% 54.6%
2qyxB01 3.30.70.1360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › mj0159-like 0.54 37.0 3.54e-01 72.2% 82.6%
2ln3A00 3.30.110.140 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › 0.54 39.0 4.08e-01 90.0% 84.3%
3pg1A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 40.0 3.61e-01 81.1% 64.3%
8begA02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 45.0 3.74e-01 93.3% 72.5%
1y0hB00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 41.0 3.99e-01 81.1% 98.0%
4crsA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 44.0 3.89e-01 92.2% 61.2%
1iujA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 38.0 3.66e-01 75.6% 70.6%
1xxlA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 37.0 2.79e-01 73.3% 96.2%
6udkD00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 44.0 3.90e-01 92.2% 99.2%
1anuA00 2.60.40.680 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 45.0 3.89e-01 95.6% 86.2%
3go9A02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.51 41.0 3.23e-01 92.2% 90.8%
1whrA00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.51 34.0 3.14e-01 88.9% 51.6%
1vdhA01 3.30.70.1030 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Apc35880; domain 1 0.50 38.0 3.52e-01 82.2% 85.1%
4ydjA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 42.0 3.73e-01 95.6% 98.5%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3615029 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.79 56.0 5.64e-01 74.4% 73.3%
3704048 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.72 50.0 5.20e-01 73.3% 76.5%
3652309 872.7.1.0 a+b two layers › Dodecin subunit-like › mannan-binding lectin MVL › mannan-binding lectin MVL 0.72 47.0 5.50e-01 71.1% 100.0%
3260565 306.4.1.1 a+b two layers › Glucose permease domain IIB-like › YggU-like › YggU-like › DUF167 0.69 48.0 4.89e-01 72.2% 88.9%
3335654 306.4.1.1 a+b two layers › Glucose permease domain IIB-like › YggU-like › YggU-like › DUF167 0.68 51.0 4.93e-01 77.8% 85.0%
4263022 306.4.1.1 a+b two layers › Glucose permease domain IIB-like › YggU-like › YggU-like › DUF167 0.68 48.0 4.89e-01 73.3% 88.9%
3300773 306.4.1.1 a+b two layers › Glucose permease domain IIB-like › YggU-like › YggU-like › DUF167 0.68 51.0 4.91e-01 77.8% 84.0%
4950090 306.4.1.1 a+b two layers › Glucose permease domain IIB-like › YggU-like › YggU-like › DUF167 0.68 51.0 4.92e-01 77.8% 86.0%
4137830 306.4.1.1 a+b two layers › Glucose permease domain IIB-like › YggU-like › YggU-like › DUF167 0.68 51.0 5.00e-01 77.8% 87.4%
3929061 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.68 53.0 5.21e-01 93.3% 78.9%
3246837 304.151.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase 0.67 46.0 4.51e-01 76.7% 64.0%
5584 306.4.1.1 a+b two layers › Glucose permease domain IIB-like › YggU-like › YggU-like › DUF167 0.67 50.0 4.89e-01 78.9% 84.0%
4193699 306.4.1.1 a+b two layers › Glucose permease domain IIB-like › YggU-like › YggU-like › DUF167 0.67 50.0 4.85e-01 77.8% 88.0%
4028067 306.4.1.1 a+b two layers › Glucose permease domain IIB-like › YggU-like › YggU-like › DUF167 0.67 51.0 4.97e-01 80.0% 85.0%
5075962 306.4.1.0 a+b two layers › Glucose permease domain IIB-like › YggU-like › YggU-like 0.67 51.0 5.02e-01 78.9% 89.4%
4071459 306.4.1.1 a+b two layers › Glucose permease domain IIB-like › YggU-like › YggU-like › DUF167 0.67 52.0 5.01e-01 81.1% 84.0%
3990681 306.4.1.1 a+b two layers › Glucose permease domain IIB-like › YggU-like › YggU-like › DUF167 0.67 51.0 4.75e-01 80.0% 89.1%
4945310 306.4.1.0 a+b two layers › Glucose permease domain IIB-like › YggU-like › YggU-like 0.67 51.0 4.96e-01 80.0% 83.0%
4525736 306.4.1.1 a+b two layers › Glucose permease domain IIB-like › YggU-like › YggU-like › DUF167 0.67 51.0 5.06e-01 80.0% 88.4%
3936086 306.4.1.1 a+b two layers › Glucose permease domain IIB-like › YggU-like › YggU-like › DUF167 0.67 49.0 5.10e-01 76.7% 97.6%
4273236 306.4.1.1 a+b two layers › Glucose permease domain IIB-like › YggU-like › YggU-like › DUF167 0.66 53.0 5.11e-01 85.6% 87.4%
3435437 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.66 43.0 4.27e-01 74.4% 63.2%
4031829 304.120.1.6 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer 0.66 43.0 4.52e-01 76.7% 75.0%
4660083 306.4.1.1 a+b two layers › Glucose permease domain IIB-like › YggU-like › YggU-like › DUF167 0.66 50.0 4.80e-01 78.9% 85.0%
4280848 306.4.1.1 a+b two layers › Glucose permease domain IIB-like › YggU-like › YggU-like › DUF167 0.65 53.0 5.11e-01 85.6% 89.0%
3592416 878.1.1.0 a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 0.65 47.0 4.54e-01 76.7% 74.3%
4150579 306.4.1.1 a+b two layers › Glucose permease domain IIB-like › YggU-like › YggU-like › DUF167 0.65 50.0 4.72e-01 80.0% 85.7%
4974133 306.4.1.1 a+b two layers › Glucose permease domain IIB-like › YggU-like › YggU-like › DUF167 0.65 51.0 4.87e-01 82.2% 85.6%
4931346 306.4.1.1 a+b two layers › Glucose permease domain IIB-like › YggU-like › YggU-like › DUF167 0.65 51.0 5.03e-01 82.2% 91.6%
4604674 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.65 51.0 4.35e-01 84.4% 55.2%
4618624 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.65 54.0 5.23e-01 96.7% 82.0%
4514876 812.1.1.1 a+b duplicates or obligate multimers › MinE-like › Cell division protein MinE topological specificity domain › Cell division protein MinE topological specificity domain › MinE 0.64 47.0 5.18e-01 78.9% 100.0%
3448756 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.64 43.0 4.32e-01 74.4% 67.8%
3420784 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.64 43.0 4.12e-01 74.4% 59.0%
3429635 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.63 43.0 4.22e-01 73.3% 65.3%
3426902 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.62 47.0 4.69e-01 91.1% 76.8%
None 0.62 51.0 4.28e-01 93.3% 51.2%
3401714 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.62 49.0 4.45e-01 86.7% 63.3%
4045455 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.62 44.0 4.49e-01 87.8% 77.6%
4376910 305.1.1.0 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase 0.60 48.0 4.71e-01 90.0% 82.1%
3771028 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.60 50.0 4.66e-01 92.2% 94.8%
4935238 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.60 37.0 3.86e-01 72.2% 68.4%
4954601 304.8.1.12 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_8 0.60 36.0 3.82e-01 70.0% 69.3%
1505699 812.1.1.1 a+b duplicates or obligate multimers › MinE-like › Cell division protein MinE topological specificity domain › Cell division protein MinE topological specificity domain › MinE 0.59 45.0 4.63e-01 83.3% 95.4%
3386929 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.58 41.0 3.40e-01 72.2% 46.5%
3832146 304.8.1.68 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF493 0.58 39.0 3.87e-01 75.6% 65.3%
4163139 304.48.1.10 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › IMS 0.58 42.0 3.76e-01 86.7% 53.1%
4024263 4014.1.1.1 a+b two layers › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › DNA_topoisoIV 0.58 45.0 3.51e-01 86.7% 44.2%
4927949 2006.1.1.11 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase_3 0.58 44.0 3.29e-01 84.4% 30.8%
4026677 304.39.1.0 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain 0.58 41.0 4.04e-01 75.6% 69.0%
3601834 304.48.1.6 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_A 0.58 40.0 3.80e-01 73.3% 60.0%
3973859 312.1.1.2 a+b three layers › HIT-like › HIT-related › HIT-related › HIT 0.57 48.0 4.15e-01 94.4% 61.4%
3672892 206.1.1.83 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1, PK_Tyr_Ser-Thr 0.56 47.0 3.20e-01 90.0% 39.7%
3496383 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 43.0 4.09e-01 85.6% 74.8%
3383298 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.56 32.0 3.48e-01 72.2% 66.7%
4026401 878.1.1.7 a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Pro_sub2 0.56 43.0 4.19e-01 87.8% 78.1%
3615051 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.55 44.0 3.01e-01 87.8% 57.4%
3565431 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 45.0 3.61e-01 90.0% 83.9%
3854262 10.10.1.0 beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) 0.54 44.0 3.50e-01 90.0% 95.1%
4664239 304.130.1.1 a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion 0.53 39.0 3.96e-01 78.9% 88.9%
4954226 304.122.1.1 a+b two layers › Alpha-beta plaits › Nitrogen repressor-like proteins › Nitrogen repressor-like proteins › NRD1_2 0.52 35.0 3.46e-01 70.0% 64.0%
3245368 304.44.1.1 a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 0.52 39.0 3.88e-01 80.0% 93.7%
3786888 312.1.1.7 a+b three layers › HIT-like › HIT-related › HIT-related › ATP_transf 0.51 45.0 3.77e-01 100.0% 66.9%
3645272 242.3.1.1 a+b two layers › Homing endonucleases-like › DNA repair protein MutS, domain I › DNA repair protein MutS, domain I › MutS_I 0.50 31.0 2.90e-01 86.7% 44.0%