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IMGVR_UViG_2681812966_000001-2681812966-2682307671
Arc-VirIMGVR_UViG_2681812966_000001-2681812966-2682307671
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-57
Domain cluster:
rep: IMGVR_UViG_7000000171_000112-7000000171-SRS052697_LANL_scaffold_75554__gene_171384__D10-57
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ub4C00 | 2.10.260.10 | Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › | 0.84 | 66.0 | 5.60e-01 | 100.0% | 53.3% |
| 1yfbA00 | 2.10.260.10 | Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › | 0.81 | 59.0 | 5.72e-01 | 100.0% | 71.2% |
| 1mvfD00 | 2.10.260.10 | Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › | 0.80 | 61.0 | 6.31e-01 | 100.0% | 90.9% |
| 2l66A00 | 2.10.260.10 | Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › | 0.70 | 50.0 | 4.88e-01 | 100.0% | 71.7% |
| 3o27B00 | 2.10.260.10 | Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › | 0.65 | 48.0 | 4.63e-01 | 100.0% | 71.9% |
| 4ejoA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 39.0 | 3.04e-01 | 70.2% | 59.8% |
| 3duwA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.58 | 40.0 | 2.65e-01 | 72.3% | 33.8% |
| 4za1C00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 34.0 | 2.83e-01 | 87.2% | 30.4% |
| 4ctaA02 | 3.30.70.2860 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 33.0 | 2.88e-01 | 83.0% | 36.0% |
| 1ixrA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.55 | 40.0 | 3.70e-01 | 78.7% | 92.1% |
| 2v1xA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 35.0 | 2.77e-01 | 70.2% | 30.0% |
| 2wdoA00 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.53 | 43.0 | 3.32e-01 | 100.0% | 61.8% |
| 4kdyB01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.52 | 34.0 | 2.83e-01 | 93.6% | 38.7% |
| 5suvC00 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.52 | 41.0 | 3.26e-01 | 100.0% | 64.0% |
| 4dg8A02 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.52 | 35.0 | 2.95e-01 | 83.0% | 37.0% |
| 4ivkA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.51 | 34.0 | 2.05e-01 | 70.2% | 92.8% |
| 1xhsA00 | 3.10.490.10 | Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like | 0.50 | 33.0 | 2.57e-01 | 80.9% | 26.5% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5067548 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.90 | 73.0 | 7.47e-01 | 100.0% | 91.1% |
| 4085449 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.87 | 68.0 | 5.75e-01 | 100.0% | 53.3% |
| 5032176 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.87 | 69.0 | 6.34e-01 | 100.0% | 68.3% |
| 3588700 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.86 | 73.0 | 6.05e-01 | 100.0% | 55.0% |
| 4933873 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.85 | 68.0 | 6.46e-01 | 100.0% | 74.5% |
| 5078891 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.85 | 77.0 | 7.27e-01 | 100.0% | 85.5% |
| 4936825 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.84 | 57.0 | 5.66e-01 | 80.9% | 68.0% |
| 4992409 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.82 | 64.0 | 6.51e-01 | 100.0% | 88.9% |
| 4954534 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.82 | 67.0 | 6.66e-01 | 100.0% | 88.0% |
| 5001623 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.82 | 63.0 | 6.28e-01 | 100.0% | 82.0% |
| 5029523 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.80 | 64.0 | 6.36e-01 | 100.0% | 87.5% |
| 4929443 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.80 | 69.0 | 6.76e-01 | 100.0% | 90.0% |
| 5074387 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.79 | 64.0 | 6.16e-01 | 100.0% | 79.2% |
| 5073296 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.79 | 63.0 | 6.24e-01 | 100.0% | 86.0% |
| 1948837 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.79 | 59.0 | 5.87e-01 | 100.0% | 81.2% |
| 5032935 | 304.8.1.112 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › MazE_antitoxin | 0.79 | 59.0 | 4.28e-01 | 100.0% | 28.9% |
| 5031988 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.78 | 58.0 | 5.78e-01 | 100.0% | 78.0% |
| 4994020 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.77 | 57.0 | 5.42e-01 | 100.0% | 67.2% |
| 5057441 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.75 | 58.0 | 5.92e-01 | 100.0% | 93.3% |
| 5060420 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.74 | 56.0 | 5.73e-01 | 100.0% | 88.9% |
| 4958102 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.74 | 60.0 | 5.39e-01 | 100.0% | 64.6% |
| 4941368 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.68 | 47.0 | 5.12e-01 | 78.7% | 100.0% |
| 3038102 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.64 | 50.0 | 4.91e-01 | 100.0% | 89.3% |
| 4937554 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.64 | 46.0 | 4.87e-01 | 87.2% | 97.4% |
| 4956065 | 2.26.1.1 ↗ | beta barrels › OB-fold › Arcadin-1 › Arcadin-1 › Arcadin_1 | 0.63 | 51.0 | 4.19e-01 | 100.0% | 82.0% |
| 3827943 | 1.1.11.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › At2g31720-like | 0.63 | 50.0 | 4.29e-01 | 100.0% | 54.4% |
| 1282166 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.63 | 47.0 | 4.54e-01 | 100.0% | 73.3% |
| 5055279 | 1075.1.2.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain | 0.62 | 38.0 | 2.51e-01 | 78.7% | 14.1% |
| 3419370 | 6063.1.1.0 ↗ | alpha duplicates or obligate multimers › BNIP3 transmembrane domain › BNIP3 transmembrane domain › BNIP3 transmembrane domain | 0.61 | 37.0 | 3.68e-01 | 80.9% | 56.0% |
| 5027694 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.59 | 46.0 | 4.50e-01 | 100.0% | 83.3% |
| 3440138 | 1.1.11.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain | 0.58 | 49.0 | 4.16e-01 | 97.9% | 57.5% |
| 5030944 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.58 | 39.0 | 3.95e-01 | 76.6% | 73.3% |
| 4534384 | 1.1.3.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › SymE_toxin | 0.57 | 47.0 | 4.57e-01 | 100.0% | 85.2% |
| 3309149 | 1.1.11.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain | 0.57 | 40.0 | 3.70e-01 | 76.6% | 55.4% |
| 3451717 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.56 | 47.0 | 3.98e-01 | 100.0% | 98.8% |
| 3403299 | 358.1.1.0 ↗ | a+b complex topology › SRCR-like › SRCR-like › SRCR-like | 0.56 | 40.0 | 3.79e-01 | 83.0% | 62.7% |
| 4952930 | 2.21.1.0 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) | 0.55 | 40.0 | 3.40e-01 | 83.0% | 74.1% |
| 4940950 | 101.1.2.143 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_34 | 0.54 | 37.0 | 3.18e-01 | 72.3% | 83.7% |
| 3813009 | 207.1.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1 | 0.54 | 47.0 | 2.81e-01 | 100.0% | 69.2% |
| 3282087 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.54 | 36.0 | 2.46e-01 | 72.3% | 21.5% |
| 3550522 | 101.1.2.111 ↗ | alpha arrays › HTH › HTH › winged helix domain › RQC | 0.53 | 35.0 | 2.74e-01 | 70.2% | 28.7% |
| 3254525 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.52 | 36.0 | 3.14e-01 | 80.9% | 45.0% |
| 3673110 | 387.1.5.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like | 0.51 | 33.0 | 3.49e-01 | 80.9% | 80.0% |
| 3399126 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.50 | 38.0 | 2.96e-01 | 100.0% | 71.7% |