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IMGVR_UViG_2681813027_000001-2681813027-2682580640

Arc-Vir

IMGVR_UViG_2681813027_000001-2681813027-2682580640

Identity

Kingdom:
archaea

Quality

71.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-76
PDB
Domain cluster: rep: IMGVR_UViG_3300028048_000061-3300028048-Ga0256405_1000034366__D3-97
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.76 64.0 6.12e-01 100.0% 79.5%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 52.0 5.77e-01 97.3% 100.0%
6c6sD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 51.0 5.53e-01 94.6% 95.0%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 48.0 5.22e-01 95.9% 89.8%
4iauA01 2.60.20.10 Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › Crystallins 0.69 35.0 3.50e-01 74.3% 44.9%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.69 46.0 5.25e-01 90.5% 96.2%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.69 45.0 5.11e-01 83.8% 92.6%
6bogA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 47.0 5.38e-01 95.9% 100.0%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 44.0 5.13e-01 86.5% 100.0%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 46.0 5.26e-01 87.8% 100.0%
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 45.0 5.19e-01 90.5% 100.0%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.67 54.0 5.62e-01 100.0% 98.5%
1ex4B02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.66 46.0 5.12e-01 85.1% 91.5%
2e6nA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 47.0 4.27e-01 100.0% 54.8%
1ou8A00 2.30.30.220 Mainly Beta › Roll › SH3 type barrels. › SspB-like 0.65 58.0 5.16e-01 100.0% 79.2%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 49.0 4.94e-01 81.1% 89.3%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.65 43.0 5.02e-01 90.5% 100.0%
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.64 51.0 4.74e-01 98.6% 68.4%
2p4tA00 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.63 46.0 5.00e-01 97.3% 100.0%
2eqkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 47.0 4.74e-01 100.0% 83.6%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 46.0 4.68e-01 100.0% 82.2%
3ntkA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 46.0 4.49e-01 100.0% 73.8%
6l4qB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 44.0 3.69e-01 83.8% 99.3%
3doaA01 2.30.310.10 Mainly Beta › Roll › ibrinogen binding protein from staphylococcus aureus fold › ibrinogen binding protein from staphylococcus aureus domain 0.58 47.0 3.76e-01 90.5% 73.2%
5bncA02 3.20.180.10 Alpha Beta › Alpha-Beta Barrel › Split barrel-like › PNP-oxidase-like 0.57 48.0 4.48e-01 93.2% 83.9%
1u3oA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 39.0 4.22e-01 74.3% 96.8%
2avtA02 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.56 44.0 3.31e-01 87.8% 46.2%
5yjlC02 3.20.180.10 Alpha Beta › Alpha-Beta Barrel › Split barrel-like › PNP-oxidase-like 0.56 48.0 4.20e-01 94.6% 73.9%
4l2iB00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.55 49.0 3.38e-01 100.0% 67.7%
4fnvA02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.55 42.0 2.93e-01 85.1% 85.5%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.55 48.0 3.64e-01 100.0% 46.8%
1efpB00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.55 48.0 3.41e-01 100.0% 74.0%
2z8lA01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.55 48.0 4.17e-01 100.0% 81.2%
3f7eA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 39.0 3.28e-01 86.5% 43.8%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.54 43.0 3.76e-01 86.5% 80.5%
6fopA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.54 43.0 3.12e-01 89.2% 42.5%
3kyeA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.53 36.0 3.16e-01 82.4% 43.7%
1et9A01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.53 46.0 4.07e-01 98.6% 91.8%
1rwzA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.53 42.0 2.96e-01 87.8% 36.1%
3t0pA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.53 39.0 3.10e-01 85.1% 48.2%
1rfeA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 38.0 3.12e-01 86.5% 41.2%
5upiA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.52 42.0 3.15e-01 89.2% 52.1%
2grgA01 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.52 40.0 3.87e-01 82.4% 100.0%
6u5vB07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.52 39.0 3.32e-01 82.4% 96.9%
3a1jB00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.51 40.0 2.78e-01 87.8% 32.7%
3pweA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.51 43.0 3.74e-01 100.0% 88.6%
1t6lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.50 43.0 3.06e-01 98.6% 83.5%
6ptrB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.50 41.0 3.75e-01 100.0% 93.8%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5027750 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.87 60.0 6.91e-01 75.7% 96.4%
4559371 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.86 68.0 7.37e-01 100.0% 98.4%
4010681 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.85 69.0 6.31e-01 100.0% 67.4%
4079197 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.82 62.0 5.92e-01 98.6% 69.4%
4589595 4.1.1.447 ↗ beta barrels › SH3 › SH3 › SH3 › PF28065 0.81 64.0 6.80e-01 97.3% 95.4%
3267329 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 59.0 4.92e-01 98.6% 45.6%
4335951 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.79 67.0 6.82e-01 100.0% 91.8%
4270910 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.79 66.0 6.80e-01 100.0% 94.3%
5032461 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 66.0 6.99e-01 98.6% 100.0%
4282868 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.78 66.0 6.75e-01 100.0% 95.7%
3976834 4.1.1.156 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2158 0.76 49.0 5.73e-01 94.6% 98.0%
3302818 4.1.1.236 ↗ beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.76 51.0 5.72e-01 98.6% 94.5%
4101502 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.75 52.0 5.97e-01 95.9% 100.0%
3328489 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 50.0 5.19e-01 83.8% 74.3%
3942912 4.1.1.323 ↗ beta barrels › SH3 › SH3 › SH3 › WYL 0.73 63.0 6.01e-01 100.0% 82.4%
4168737 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 61.0 6.19e-01 100.0% 91.9%
4141828 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.72 60.0 6.09e-01 100.0% 91.9%
959119 4.1.1.75 ↗ beta barrels › SH3 › SH3 › SH3 › NdhS 0.72 50.0 5.66e-01 94.6% 100.0%
3281945 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.72 64.0 5.99e-01 100.0% 80.0%
4011604 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.72 58.0 5.80e-01 100.0% 85.3%
4547801 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 57.0 5.35e-01 100.0% 71.1%
5077969 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 58.0 5.68e-01 98.6% 82.5%
151542 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 50.0 5.30e-01 95.9% 83.3%
4461457 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 50.0 5.36e-01 97.3% 87.5%
4177200 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.70 50.0 5.59e-01 97.3% 100.0%
4087011 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 65.0 5.92e-01 100.0% 80.0%
5036498 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.69 51.0 5.13e-01 100.0% 77.3%
4093836 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 52.0 5.69e-01 98.6% 100.0%
3485965 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 51.0 5.57e-01 100.0% 98.3%
490 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.67 54.0 5.46e-01 100.0% 89.2%
3765289 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.67 48.0 4.53e-01 100.0% 62.2%
3941391 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 47.0 5.13e-01 94.6% 91.7%
3503815 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.67 49.0 4.71e-01 100.0% 68.2%
1114686 4.1.1.8 ↗ beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.66 48.0 5.34e-01 78.4% 100.0%
3840679 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.66 49.0 4.49e-01 100.0% 61.1%
3581143 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.66 46.0 4.88e-01 97.3% 83.1%
3407089 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.66 49.0 4.82e-01 100.0% 73.8%
4147056 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.66 49.0 4.44e-01 100.0% 59.0%
3935101 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 51.0 5.40e-01 100.0% 96.9%
3926179 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 51.0 5.39e-01 95.9% 95.4%
3237262 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.65 49.0 4.32e-01 100.0% 54.5%
4946028 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 52.0 4.90e-01 97.3% 71.1%
3696171 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 48.0 3.03e-01 100.0% 15.1%
3910433 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 49.0 5.20e-01 98.6% 93.8%
3474715 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 47.0 4.95e-01 86.5% 87.7%
3541241 4.1.1.8 ↗ beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.64 44.0 4.79e-01 94.6% 88.3%
4055256 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.64 48.0 4.49e-01 100.0% 65.6%
3938389 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.63 49.0 4.72e-01 100.0% 72.9%
3547093 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.61 47.0 4.43e-01 100.0% 67.8%
3858885 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 43.0 4.80e-01 93.2% 100.0%
3881121 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.61 47.0 4.26e-01 100.0% 62.0%
3910727 4.1.1.353 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_TNRC18 0.60 45.0 4.76e-01 98.6% 93.8%
3769507 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.60 43.0 4.41e-01 94.6% 80.0%
4938445 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.60 46.0 3.83e-01 100.0% 46.7%
3684646 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 51.0 5.01e-01 100.0% 87.5%
3658643 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.59 50.0 4.05e-01 100.0% 48.3%
3467678 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 49.0 4.32e-01 100.0% 61.8%
3822364 3270.1.1.1 ↗ a+b two layers › a+b domain in heme oxygenase › a+b domain in heme oxygenase › a+b domain in heme oxygenase › DUF2470 0.58 48.0 4.66e-01 90.5% 88.2%
3986515 2005.1.1.10 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ETF 0.58 52.0 3.59e-01 100.0% 70.2%
3346613 3270.1.1.1 ↗ a+b two layers › a+b domain in heme oxygenase › a+b domain in heme oxygenase › a+b domain in heme oxygenase › DUF2470 0.58 50.0 4.72e-01 94.6% 90.0%
2642957 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 46.0 4.57e-01 97.3% 97.5%
5033948 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.54 42.0 3.58e-01 87.8% 68.5%
3507003 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 47.0 4.70e-01 100.0% 98.7%
3509387 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.53 46.0 3.99e-01 100.0% 86.7%
3231101 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.53 39.0 2.72e-01 82.4% 22.8%
4047098 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.52 44.0 3.85e-01 100.0% 92.5%
3734667 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 40.0 3.11e-01 89.2% 50.6%
144176 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.50 42.0 3.68e-01 100.0% 88.7%