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IMGVR_UViG_2681813027_000001-2681813027-2682580655

Arc-Vir

IMGVR_UViG_2681813027_000001-2681813027-2682580655

Identity

Kingdom:
archaea

Quality

79.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-51
PDB
Domain cluster: representative
CATH (60)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3op1A02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.74 65.0 4.74e-01 100.0% 48.6%
4yo1A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.68 56.0 4.52e-01 100.0% 51.7%
1gn4A02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.68 53.0 3.97e-01 100.0% 33.9%
3cp7A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.66 51.0 4.04e-01 100.0% 47.7%
3tk9A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.66 51.0 4.03e-01 100.0% 85.0%
3qdfA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.66 53.0 4.84e-01 95.1% 100.0%
3tzgA00 2.40.160.150 Mainly Beta › Beta Barrel › Porin › 0.65 52.0 3.30e-01 95.1% 43.9%
1b23P03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.65 51.0 4.08e-01 95.1% 59.6%
2a2jA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.65 50.0 3.37e-01 100.0% 26.1%
3db0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 50.0 3.81e-01 100.0% 41.9%
3u5wA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 52.0 3.84e-01 97.6% 43.7%
6mv2A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.63 50.0 3.95e-01 100.0% 66.7%
2w5eA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.63 48.0 4.27e-01 100.0% 60.8%
1dleB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.63 50.0 3.62e-01 100.0% 55.6%
7byjA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 52.0 4.12e-01 100.0% 86.3%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 49.0 3.91e-01 100.0% 80.6%
2n59A00 2.60.40.2420 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 49.0 3.91e-01 100.0% 57.4%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 50.0 3.84e-01 100.0% 69.7%
2f4lA02 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.61 42.0 4.17e-01 70.7% 86.0%
2ok5A02 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.61 47.0 3.13e-01 97.6% 44.3%
2psbA00 3.50.90.10 Alpha Beta › 3-Layer(bba) Sandwich › YerB-like fold › YerB-like 0.61 48.0 2.98e-01 95.1% 16.9%
3cpxA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.61 46.0 4.28e-01 97.6% 67.7%
4ecnA01 2.60.40.3540 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4458 0.61 47.0 3.81e-01 100.0% 50.5%
2hq9B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 46.0 3.47e-01 100.0% 37.2%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 49.0 4.03e-01 100.0% 82.6%
5xpyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 48.0 3.71e-01 100.0% 69.4%
4bi3A01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.60 46.0 3.82e-01 100.0% 49.5%
5mj6A03 2.60.40.1910 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 46.0 3.99e-01 100.0% 56.2%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.58 47.0 3.74e-01 95.1% 51.1%
2htiA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 45.0 3.44e-01 100.0% 41.3%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 46.0 4.15e-01 97.6% 75.0%
6vgwA01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.58 48.0 3.41e-01 100.0% 90.1%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.58 45.0 3.90e-01 100.0% 72.7%
2r0xA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 43.0 3.17e-01 100.0% 36.5%
2z3gB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.56 43.0 3.31e-01 100.0% 37.8%
7ylrA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 42.0 3.43e-01 100.0% 65.7%
5hdwA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.56 45.0 3.36e-01 100.0% 48.1%
3uh8A00 2.60.40.3350 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 41.0 3.26e-01 97.6% 44.1%
2xc8A00 2.60.40.2980 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 43.0 3.29e-01 100.0% 34.7%
1n26A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 42.0 3.37e-01 97.6% 51.4%
3ml4C01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 41.0 3.35e-01 100.0% 87.0%
3bn6A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 43.0 3.08e-01 100.0% 54.4%
3zn6A02 2.60.40.3410 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 41.0 3.48e-01 97.6% 70.1%
4n0rA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 41.0 3.54e-01 100.0% 52.9%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 41.0 3.19e-01 92.7% 90.9%
3nngA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 41.0 3.03e-01 100.0% 36.6%
3f6zB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.53 39.0 3.40e-01 90.2% 96.2%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.53 42.0 2.88e-01 100.0% 36.2%
2n3gA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 38.0 3.21e-01 78.0% 43.1%
4pofA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.53 39.0 3.87e-01 100.0% 92.0%
2e8yA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 40.0 3.34e-01 100.0% 47.4%
2f1eA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.52 39.0 3.08e-01 97.6% 46.6%
5t89Y06 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 37.0 3.07e-01 82.9% 58.7%
5chtB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.52 40.0 2.52e-01 100.0% 26.7%
7bv5D01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.52 42.0 2.90e-01 97.6% 42.9%
2hqvA00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.51 41.0 2.81e-01 97.6% 32.0%
4z48A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.51 42.0 2.64e-01 95.1% 81.2%
2kt9A01 3.30.390.140 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.51 42.0 3.27e-01 97.6% 96.0%
4o9gA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 39.0 2.91e-01 100.0% 31.9%
2v5yA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 39.0 3.17e-01 100.0% 45.1%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4980573 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.67 53.0 3.60e-01 100.0% 34.2%
5029405 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.65 54.0 5.01e-01 100.0% 94.5%
3518574 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.65 54.0 3.74e-01 100.0% 31.6%
5064007 219.1.1.76 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF553 0.64 50.0 3.48e-01 100.0% 32.8%
3889025 12.5.1.6 beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › FIIND 0.64 50.0 3.66e-01 97.6% 30.4%
4634055 219.1.1.76 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF553 0.64 50.0 3.42e-01 100.0% 32.1%
3951474 1.1.5.9 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx,PNP_phzG_C 0.64 49.0 3.27e-01 100.0% 24.8%
4971294 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 50.0 4.41e-01 100.0% 72.9%
3266483 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 51.0 3.92e-01 100.0% 69.1%
3309149 1.1.11.0 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain 0.63 52.0 4.56e-01 97.6% 87.7%
3226939 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 50.0 3.96e-01 100.0% 82.0%
4034335 4.11.1.1 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.62 50.0 3.81e-01 97.6% 46.4%
3607898 375.1.1.58 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MCM_OB 0.62 48.0 4.52e-01 97.6% 85.5%
3216034 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 49.0 3.54e-01 100.0% 62.7%
2095 4976.1.1.1 beta sandwiches › C-terminal domain in YerB-like proteins › C-terminal domain in YerB-like proteins › C-terminal domain in YerB-like proteins › DUF3048_C 0.61 48.0 3.53e-01 95.1% 37.7%
4118226 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 48.0 4.22e-01 100.0% 71.4%
3861490 220.1.1.118 beta barrels › PH domain-like › PH domain-like › PH domain-like › RHG20_PH 0.60 47.0 3.77e-01 97.6% 83.0%
5032178 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.60 48.0 3.13e-01 100.0% 30.6%
5055679 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 46.0 4.11e-01 97.6% 75.7%
3428296 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 46.0 4.26e-01 100.0% 84.6%
3707172 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 46.0 3.43e-01 100.0% 60.0%
3521189 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 47.0 3.68e-01 100.0% 46.7%
5079674 11.21.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.59 43.0 3.86e-01 95.1% 61.3%
5031117 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 43.0 3.49e-01 95.1% 43.8%
3744032 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.58 48.0 3.42e-01 100.0% 62.8%
5009312 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 46.0 3.58e-01 100.0% 60.0%
5031118 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 44.0 3.54e-01 100.0% 42.7%
5030334 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 46.0 3.57e-01 97.6% 44.5%
3060767 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 44.0 4.31e-01 100.0% 94.0%
3164898 4.11.1.1 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.58 44.0 3.64e-01 100.0% 53.7%
4100007 10.32.1.51 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_35 0.57 44.0 3.41e-01 100.0% 40.8%
5008350 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 46.0 3.86e-01 100.0% 61.3%
None 0.56 44.0 2.72e-01 97.6% 22.2%
3506829 304.102.1.1 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 0.56 42.0 2.71e-01 100.0% 50.4%
3799231 11.1.1.67 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF525 0.56 45.0 3.22e-01 100.0% 41.3%
5077150 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 42.0 3.51e-01 100.0% 48.4%
3839556 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 38.0 2.39e-01 73.2% 16.0%
5042583 10.3.1.0 beta sandwiches › jelly-roll › TNF-like › TNF-like 0.55 42.0 3.50e-01 100.0% 47.4%
4047081 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.54 42.0 3.59e-01 100.0% 52.9%
3507953 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 40.0 3.58e-01 90.2% 81.4%
4875314 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.53 44.0 3.27e-01 100.0% 59.2%
3508353 2484.1.1.1 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.52 44.0 2.76e-01 100.0% 71.2%
4973922 10.4.1.0 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.52 40.0 3.11e-01 87.8% 96.8%
3252438 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.52 36.0 2.59e-01 75.6% 45.5%
4501238 207.1.1.37 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › C-JID 0.51 39.0 2.56e-01 97.6% 65.3%
5036972 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 41.0 3.26e-01 100.0% 43.0%
5029577 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.51 40.0 3.68e-01 100.0% 66.7%
3421596 10.12.1.31 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_5 0.51 40.0 3.10e-01 100.0% 42.4%
3700507 2004.1.1.427 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RHSP, RHS_N 0.50 42.0 2.51e-01 100.0% 15.5%
3514788 2492.1.1.0 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.50 37.0 2.55e-01 97.6% 27.4%