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IMGVR_UViG_2681813379_000001-2681813379-2684011052
Arc-VirIMGVR_UViG_2681813379_000001-2681813379-2684011052
Identity
- Kingdom:
- archaea
Quality
84.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 139-211
Domain cluster:
rep: SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00088__D33-109
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01844.30 best | HNH | 37.2 | 3.70e-09 | 76.7% | 91.5% |
D2
medium
residues 13-63
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5vmzA03 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.84 | 54.0 | 6.02e-01 | 92.2% | 85.0% |
| 1oi2A02 | 3.30.1180.20 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › Dihydroxyacetone kinase; domain 2 | 0.59 | 42.0 | 3.03e-01 | 78.4% | 94.4% |
| 3lmmA03 | 3.30.565.60 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › | 0.56 | 47.0 | 3.35e-01 | 98.0% | 97.1% |
| 5b3hC01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.56 | 39.0 | 4.04e-01 | 94.1% | 79.2% |
| 1k8kA04 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.54 | 35.0 | 2.99e-01 | 84.3% | 37.0% |
| 2jigA01 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.53 | 38.0 | 2.63e-01 | 78.4% | 85.0% |
| 1c4zA01 | 3.90.1750.10 | Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Hect, E3 ligase catalytic domains | 0.52 | 41.0 | 3.01e-01 | 94.1% | 89.4% |
| 3bmxA01 | 3.20.20.300 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase, family 3, N-terminal domain | 0.51 | 41.0 | 2.54e-01 | 100.0% | 57.1% |
| 7uvpA02 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.51 | 38.0 | 3.48e-01 | 80.4% | 73.9% |
| 4bwxA03 | 1.10.287.3700 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.51 | 32.0 | 2.81e-01 | 72.5% | 41.2% |
| 7uqyB01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.50 | 38.0 | 2.58e-01 | 84.3% | 61.2% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3247107 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.91 | 51.0 | 6.43e-01 | 88.2% | 96.7% |
| 3410995 | 386.1.1.264 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2, zf-C2H2_jaz | 0.81 | 50.0 | 4.66e-01 | 96.1% | 53.3% |
| 4426356 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.80 | 53.0 | 5.66e-01 | 80.4% | 79.5% |
| 3401265 | 386.1.1.133 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2+zf-C2H2_4 | 0.78 | 52.0 | 4.74e-01 | 98.0% | 53.8% |
| 3843041 | 386.1.1.234 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2, zf-H2C2_2, zf-C2H2_4 | 0.76 | 50.0 | 4.00e-01 | 88.2% | 36.8% |
| 3751405 | 386.1.1.234 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2, zf-H2C2_2, zf-C2H2_4 | 0.75 | 50.0 | 4.56e-01 | 88.2% | 53.8% |
| 4228064 | 386.1.1.244 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2, zf-met | 0.68 | 50.0 | 4.19e-01 | 78.4% | 97.6% |
| 3910228 | 386.1.1.26 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_6 | 0.65 | 49.0 | 3.72e-01 | 100.0% | 37.3% |
| 3514160 | 386.1.1.21 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.65 | 50.0 | 4.22e-01 | 100.0% | 52.5% |
| 3509728 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.64 | 47.0 | 4.65e-01 | 84.3% | 72.7% |
| 3226056 | 708.1.1.29 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › PF29862, PF29863 | 0.61 | 55.0 | 4.02e-01 | 100.0% | 97.8% |
| 3412378 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.59 | 37.0 | 3.88e-01 | 70.6% | 68.9% |
| 3303482 | 221.1.1.111 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiq_DUF_assoc | 0.57 | 43.0 | 3.60e-01 | 84.3% | 92.6% |
| 3683985 | 221.1.1.111 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiq_DUF_assoc | 0.57 | 43.0 | 3.63e-01 | 84.3% | 96.7% |
| 3257981 | 386.1.1.74 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-Di19 | 0.57 | 45.0 | 4.44e-01 | 86.3% | 96.4% |
| 3724934 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.57 | 40.0 | 2.76e-01 | 76.5% | 43.7% |
| 3441593 | 221.1.1.111 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiq_DUF_assoc | 0.56 | 42.0 | 3.52e-01 | 84.3% | 91.6% |
| 3929908 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.56 | 49.0 | 3.35e-01 | 96.1% | 65.5% |
| 3383014 | 2003.1.10.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain | 0.54 | 36.0 | 3.31e-01 | 88.2% | 49.3% |
| 4386701 | 310.2.1.35 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › PF28954 | 0.54 | 36.0 | 2.68e-01 | 78.4% | 24.1% |
| 3604748 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 42.0 | 2.86e-01 | 94.1% | 47.4% |
| 5066263 | 2006.1.4.54 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › Mut7-C | 0.53 | 38.0 | 2.97e-01 | 80.4% | 79.8% |
| 4778018 | 1016.1.1.1 ↗ | alpha arrays › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Pan3_PK | 0.51 | 32.0 | 2.78e-01 | 72.5% | 40.2% |
| 3293767 | 304.3.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA | 0.51 | 40.0 | 3.49e-01 | 84.3% | 85.3% |
| 3887272 | 386.1.1.41 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf_C2H2_ZHX | 0.51 | 41.0 | 3.64e-01 | 98.0% | 88.2% |
| 3857827 | 109.4.1.2045 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_6 | 0.50 | 40.0 | 2.75e-01 | 92.2% | 35.0% |
| 3693835 | 601.1.1.90 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › DUF3433 | 0.50 | 41.0 | 2.90e-01 | 94.1% | 61.8% |
| 4279139 | 3819.2.1.1 ↗ | alpha complex topology › CRISPR-associated endonuclease Cas9 alpha-helical lobe › F. novicida CRISPR-associated endonuclease Cas9 alpha-helical lobe › F. novicida CRISPR-associated endonuclease Cas9 alpha-helical lobe › Csx12 | 0.50 | 41.0 | 2.30e-01 | 100.0% | 15.8% |
| 3591105 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.50 | 40.0 | 2.67e-01 | 92.2% | 52.2% |
| 3786957 | 4291.1.1.1 ↗ | beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP | 0.50 | 39.0 | 2.41e-01 | 100.0% | 50.8% |
D3
medium
residues 64-115
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4tmaJ00 | 3.30.50.10 | Alpha Beta › 2-Layer Sandwich › Erythroid Transcription Factor GATA-1; Chain A › Erythroid Transcription Factor GATA-1, subunit A | 0.74 | 49.0 | 4.79e-01 | 92.3% | 63.2% |
| 2w0tA00 | 3.30.60.160 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.65 | 46.0 | 4.93e-01 | 86.5% | 90.7% |
| 3hlbD00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.64 | 43.0 | 2.62e-01 | 73.1% | 63.1% |
| 2ku3A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.62 | 46.0 | 4.46e-01 | 92.3% | 71.0% |
| 1t0fA01 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.59 | 44.0 | 3.17e-01 | 82.7% | 50.0% |
| 3vhtB02 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.56 | 37.0 | 4.32e-01 | 80.8% | 100.0% |
| 1wjpA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.54 | 28.0 | 3.45e-01 | 73.1% | 83.9% |
| 2d9rA00 | 2.40.30.100 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › AF2212/PG0164-like | 0.50 | 37.0 | 3.31e-01 | 98.1% | 52.9% |
| 2xocA01 | 3.30.40.140 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › | 0.50 | 40.0 | 3.54e-01 | 88.5% | 66.7% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5004198 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.84 | 54.0 | 6.26e-01 | 76.9% | 100.0% |
| 5004690 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.83 | 54.0 | 6.28e-01 | 75.0% | 100.0% |
| 4155531 | 377.1.1.15 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › YacG | 0.75 | 50.0 | 5.10e-01 | 88.5% | 72.0% |
| 4061693 | 101.28.1.1 ↗ | alpha arrays › HTH › helical bundles in FlhC-like proteins › helical bundles in FlhC-like proteins › FlhC | 0.71 | 50.0 | 3.90e-01 | 84.6% | 33.9% |
| 5065789 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.69 | 45.0 | 4.89e-01 | 78.8% | 87.5% |
| 3362601 | 148.1.3.176 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF1677 | 0.66 | 47.0 | 4.49e-01 | 78.8% | 95.4% |
| 3330188 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.65 | 56.0 | 5.17e-01 | 94.2% | 86.2% |
| 3777921 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.63 | 46.0 | 2.81e-01 | 94.2% | 11.1% |
| 3656818 | 376.1.3.9 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD_2 | 0.59 | 45.0 | 4.17e-01 | 94.2% | 64.3% |
| 3889954 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.59 | 41.0 | 4.16e-01 | 92.3% | 78.0% |
| 3472069 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.58 | 43.0 | 3.93e-01 | 90.4% | 60.0% |
| 4960538 | 375.10.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha | 0.58 | 37.0 | 3.64e-01 | 73.1% | 56.7% |
| 5027835 | 314.1.1.2 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b | 0.56 | 39.0 | 2.33e-01 | 75.0% | 53.2% |
| 4407987 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.54 | 34.0 | 3.39e-01 | 84.6% | 58.2% |
| 3724489 | 3949.1.1.1 ↗ | alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › IPPT | 0.54 | 35.0 | 2.21e-01 | 78.8% | 10.6% |
| 3497994 | 375.1.1.208 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-DNL | 0.53 | 36.0 | 3.64e-01 | 71.2% | 82.0% |
| 3471310 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.52 | 33.0 | 3.55e-01 | 92.3% | 85.0% |
| 4025629 | 375.3.1.1 ↗ | few secondary structure elements › Rubredoxin-like › CSL zinc finger › CSL zinc finger › zf-DNL | 0.51 | 35.0 | 3.11e-01 | 76.9% | 45.9% |
| 3715785 | 376.1.3.3 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE | 0.51 | 40.0 | 3.60e-01 | 90.4% | 67.1% |
| 3456544 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.50 | 38.0 | 3.08e-01 | 90.4% | 41.5% |