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IMGVR_UViG_2681813379_000002-2681813379-2684010833

Arc-Vir

IMGVR_UViG_2681813379_000002-2681813379-2684010833

Identity

Kingdom:
archaea

Quality

74.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 38-87
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1z5hA03 2.60.40.1910 Mainly Beta › Sandwich › Immunoglobulin-like › 0.72 52.0 4.54e-01 100.0% 52.1%
4yo1A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.72 57.0 4.73e-01 100.0% 49.4%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.70 60.0 5.30e-01 100.0% 72.4%
2zw2A00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.70 61.0 5.16e-01 100.0% 96.5%
1vwxS02 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.69 57.0 5.11e-01 100.0% 72.4%
2fqpA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.68 48.0 3.86e-01 100.0% 38.9%
3egrA00 3.10.20.520 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B 0.67 55.0 5.22e-01 100.0% 79.4%
4dezA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.66 56.0 4.58e-01 100.0% 77.8%
4me3A03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.66 52.0 5.11e-01 100.0% 83.6%
4yarA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.66 44.0 3.35e-01 100.0% 28.5%
1t4aA00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.65 53.0 4.67e-01 96.0% 98.7%
2ou5A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.63 54.0 3.78e-01 100.0% 30.3%
2a2jA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.63 53.0 3.63e-01 100.0% 25.1%
3q8pB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.63 51.0 4.18e-01 100.0% 57.4%
4n0rA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 48.0 4.08e-01 100.0% 50.6%
2v5yA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 45.0 3.77e-01 100.0% 43.2%
4ch7A02 3.30.70.3460 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 53.0 3.66e-01 100.0% 39.8%
1fyhB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 52.0 4.17e-01 100.0% 47.6%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.61 52.0 4.13e-01 100.0% 47.1%
2ee3A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 45.0 3.66e-01 100.0% 39.8%
3tx8A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 49.0 3.94e-01 100.0% 98.2%
2hyxA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.60 47.0 3.48e-01 100.0% 32.8%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.59 49.0 3.94e-01 100.0% 46.8%
4o9gA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 41.0 3.05e-01 100.0% 26.8%
1flmA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 49.0 3.83e-01 100.0% 44.3%
6kbyA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.59 42.0 2.58e-01 78.0% 90.6%
4pofA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.59 42.0 4.28e-01 100.0% 84.0%
2wyrB02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.59 50.0 4.31e-01 100.0% 68.2%
1w99A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 48.0 3.36e-01 100.0% 34.0%
2d9rA00 2.40.30.100 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › AF2212/PG0164-like 0.56 47.0 4.01e-01 100.0% 57.6%
5f7uA06 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 47.0 3.63e-01 100.0% 40.5%
2v3sA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 45.0 3.83e-01 100.0% 100.0%
2ic2A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 46.0 3.77e-01 100.0% 51.0%
1vhoA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.55 48.0 4.19e-01 100.0% 77.9%
1wfmA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.55 47.0 3.48e-01 100.0% 45.7%
1i5pA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 47.0 3.38e-01 100.0% 36.7%
1qz8A01 2.40.10.250 Mainly Beta › Beta Barrel › Thrombin, subunit H › Replicase NSP9 0.54 42.0 3.39e-01 96.0% 41.9%
1wlfA01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.54 45.0 3.91e-01 100.0% 61.9%
6kwzA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.54 46.0 3.77e-01 98.0% 69.4%
6mv2A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 41.0 3.22e-01 82.0% 84.8%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.54 44.0 3.15e-01 100.0% 28.7%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.53 44.0 3.66e-01 100.0% 51.1%
5jpnB04 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.53 44.0 3.35e-01 100.0% 38.8%
5t0oA02 3.30.70.1430 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain 0.53 40.0 3.37e-01 90.0% 93.2%
2i44B00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.53 43.0 2.73e-01 100.0% 18.4%
2pk0A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.52 41.0 2.78e-01 98.0% 45.3%
4e6xB00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.52 38.0 2.47e-01 84.0% 45.5%
1ks6A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.51 43.0 3.47e-01 100.0% 50.5%
4tm5A01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.51 45.0 3.31e-01 100.0% 97.7%
6l4lA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.51 41.0 3.26e-01 100.0% 40.5%
2e5yA01 2.60.15.10 Mainly Beta › Sandwich › ATP Synthase; domain 1 › F0F1 ATP synthase delta/epsilon subunit, N-terminal 0.51 40.0 3.55e-01 100.0% 84.1%
3qdfA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.50 41.0 4.02e-01 100.0% 100.0%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5063757 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.76 58.0 4.96e-01 100.0% 51.9%
5081134 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.76 62.0 5.95e-01 100.0% 78.3%
2527501 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.74 63.0 5.07e-01 100.0% 52.9%
4967222 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.74 64.0 6.10e-01 100.0% 91.7%
4160542 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.72 63.0 6.01e-01 100.0% 94.8%
3968768 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.72 62.0 5.49e-01 100.0% 96.0%
2512518 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.70 58.0 4.78e-01 100.0% 54.5%
4951473 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.70 63.0 5.84e-01 100.0% 93.7%
2106285 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.70 58.0 4.66e-01 100.0% 50.9%
4013514 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.70 63.0 4.86e-01 100.0% 56.2%
2831852 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.69 62.0 4.88e-01 100.0% 58.4%
3210904 12.6.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related 0.69 56.0 4.30e-01 100.0% 38.5%
5080205 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.69 54.0 5.43e-01 100.0% 90.0%
3196738 11.1.1.644 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_Pom152 0.69 52.0 4.21e-01 100.0% 42.0%
5014684 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.68 55.0 5.33e-01 100.0% 81.0%
3345090 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.68 60.0 4.68e-01 100.0% 54.6%
4969863 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.68 59.0 5.19e-01 100.0% 66.7%
3668699 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.67 56.0 4.95e-01 100.0% 65.0%
3774247 382.1.1.24 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › NRF 0.67 57.0 4.25e-01 100.0% 49.6%
5067865 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.66 56.0 5.14e-01 100.0% 71.4%
3917143 304.100.1.0 a+b two layers › Alpha-beta plaits › PurS-like › PurS-like 0.66 56.0 5.36e-01 100.0% 95.0%
4240799 299.1.1.0 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain 0.66 57.0 4.06e-01 100.0% 34.2%
5041452 303.1.1.1 a+b four layers › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › PvlArgDC 0.65 54.0 3.95e-01 100.0% 35.3%
4945591 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 51.0 4.06e-01 100.0% 42.9%
3244077 375.1.1.58 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MCM_OB 0.62 48.0 4.65e-01 100.0% 76.7%
4945478 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.62 47.0 3.47e-01 100.0% 30.0%
3872822 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 44.0 3.62e-01 100.0% 40.0%
3941935 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.59 49.0 3.91e-01 100.0% 45.2%
5025697 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.59 51.0 3.95e-01 100.0% 66.1%
4946800 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 40.0 2.83e-01 78.0% 22.6%
5061435 11.1.1.284 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD_4 0.59 47.0 3.84e-01 100.0% 47.4%
5029262 4114.1.1.0 a+b two layers › PHP14-like › PHP14-like › PHP14-like 0.58 47.0 3.71e-01 96.0% 63.0%
3537190 2004.5.1.5 a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain › Njmu-R1 0.58 44.0 3.26e-01 86.0% 40.7%
1933551 11.1.1.323 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › AIMA-like_N 0.58 49.0 3.75e-01 100.0% 54.7%
3514788 2492.1.1.0 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.58 49.0 3.28e-01 100.0% 25.1%
3279452 1.1.7.27 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › DUF1905 0.57 46.0 4.06e-01 100.0% 60.0%
3328617 109.4.1.1992 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3, DYW_deaminase, E_motif 0.56 45.0 2.52e-01 88.0% 12.5%
3837823 109.4.1.1383 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, Eplus_motif, E_motif 0.55 48.0 2.68e-01 100.0% 14.3%
3311892 109.4.1.1267 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.55 47.0 2.83e-01 100.0% 22.8%
3330921 109.4.1.1285 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, Eplus_motif, E_motif 0.55 47.0 2.83e-01 100.0% 23.0%
4310274 73.1.1.1 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.55 47.0 3.68e-01 100.0% 90.4%
3236430 1.13.1.0 beta barrels › cradle loop barrel › Arginine N-succinyltransferase alpha chain C-terminal domain › Arginine N-succinyltransferase alpha chain C-terminal domain 0.55 47.0 4.60e-01 100.0% 90.9%
3683687 109.4.1.1267 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.55 47.0 2.66e-01 100.0% 14.5%
3825377 109.4.1.1291 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.55 40.0 2.26e-01 80.0% 16.4%
3265243 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 46.0 3.76e-01 100.0% 54.0%
4030461 284.1.1.0 a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.53 47.0 3.26e-01 100.0% 38.2%
3348902 109.4.1.1291 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.53 44.0 2.56e-01 98.0% 16.0%
3420096 109.4.1.1476 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, DYW_deaminase, E_motif 0.52 42.0 2.44e-01 100.0% 15.6%
4946228 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 40.0 3.06e-01 88.0% 80.0%
3802249 109.4.1.1291 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.51 41.0 2.43e-01 88.0% 16.0%
3679150 109.4.1.1285 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, Eplus_motif, E_motif 0.51 39.0 2.34e-01 88.0% 13.4%
3325991 10.32.1.198 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PP2 0.51 41.0 2.83e-01 98.0% 60.0%
4857347 304.139.2.1 a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7f/Csy3 › Cas_Csy3 0.50 42.0 2.67e-01 100.0% 19.5%