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IMGVR_UViG_2681813386_000001-2681813386-2684027316

Arc-Vir

IMGVR_UViG_2681813386_000001-2681813386-2684027316

Identity

Kingdom:
archaea

Quality

94.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-121
PDB
Domain cluster: rep: HQ317390.1__AFK66689.1__COPG_00093__00093__D5-82
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19835.7 best SegE_GIY-YIG 116.7 1.00e-33 95.3% 86.2%
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.72 58.0 6.21e-01 100.0% 98.9%
1gh9A00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.68 38.0 4.52e-01 77.6% 81.7%
4lvnP00 3.30.70.2380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 25.0 2.82e-01 94.4% 53.1%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
77927 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.73 59.0 6.30e-01 96.3% 97.9%
3963488 821.1.1.7 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › LEM-3_GIY-YIG 0.68 58.0 5.71e-01 98.1% 85.2%
3505268 821.1.1.0 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.62 57.0 5.21e-01 98.1% 87.4%
3279488 304.48.1.48 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GGDEF_2 0.50 36.0 3.17e-01 75.7% 67.9%