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IMGVR_UViG_2681813395_000001-2681813395-2684032304

Arc-Vir

IMGVR_UViG_2681813395_000001-2681813395-2684032304

Identity

Kingdom:
archaea

Quality

73.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-83
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2rdcA00 1.10.287.800 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 0.75 56.0 4.69e-01 80.2% 47.4%
1zhcA00 6.10.280.50 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 49.0 5.06e-01 74.1% 100.0%
4hr1A00 1.20.1270.410 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.69 55.0 4.81e-01 85.2% 86.4%
3l0iA01 1.20.120.1520 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.68 57.0 4.53e-01 95.1% 87.5%
2wyhB04 1.20.1270.50 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain 0.68 56.0 5.20e-01 90.1% 98.0%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.67 49.0 4.35e-01 77.8% 54.7%
4xvxA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.66 51.0 4.21e-01 82.7% 67.3%
4dylA02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.66 48.0 4.60e-01 77.8% 70.2%
2pmrA00 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.64 46.0 4.75e-01 75.3% 96.1%
3fppA03 6.10.140.1990 Special › Helix non-globular › Helix Hairpins › 0.64 46.0 4.56e-01 76.5% 70.5%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.63 44.0 4.50e-01 74.1% 75.3%
2gsoA01 3.40.720.10 Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A 0.63 50.0 3.40e-01 84.0% 69.9%
6p73A02 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.60 51.0 4.27e-01 95.1% 70.6%
2p0tA01 1.10.60.30 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › PSPTO4464-like domains 0.58 39.0 4.03e-01 70.4% 73.7%
5jc3A02 1.20.1320.30 Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › 0.56 43.0 3.73e-01 82.7% 77.0%
2vs0A00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.55 39.0 3.96e-01 76.5% 74.4%
4wzxA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.54 42.0 4.37e-01 81.5% 100.0%
2rd9B01 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.53 42.0 3.31e-01 86.4% 92.6%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3705683 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.73 53.0 4.93e-01 77.8% 61.0%
4991538 3755.4.1.0 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.73 63.0 4.85e-01 95.1% 70.9%
3438244 3755.3.1.121 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Sin3_corepress 0.71 57.0 5.01e-01 95.1% 59.2%
3992828 4106.1.1.1 ↗ few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.69 57.0 4.18e-01 91.4% 77.3%
5044962 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.69 58.0 5.52e-01 93.8% 92.6%
5028088 3877.1.1.0 ↗ alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC 0.68 49.0 4.06e-01 77.8% 42.4%
4988178 633.29.1.0 ↗ alpha bundles › Bromodomain-like › Putative uncharacterized protein PAV1-137 › Putative uncharacterized protein PAV1-137 0.68 51.0 4.87e-01 80.2% 80.0%
3832190 611.11.1.0 ↗ alpha bundles › N-cbl like › Plasmodium host cell traversal protein SPECT1 › Plasmodium host cell traversal protein SPECT1 0.66 58.0 4.53e-01 98.8% 65.0%
3270696 604.7.1.1 ↗ alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA 0.66 49.0 4.53e-01 79.0% 73.3%
4858809 2004.1.1.2 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.65 49.0 4.65e-01 91.4% 68.4%
3272278 3722.1.1.0 ↗ alpha bundles › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain 0.65 53.0 3.78e-01 95.1% 40.4%
3970792 633.6.1.0 ↗ alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like 0.65 52.0 4.58e-01 87.7% 70.0%
3574913 5050.1.1.94 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › ZYG-11_interact 0.62 47.0 3.58e-01 80.2% 47.2%
3592316 7014.1.1.0 ↗ alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain 0.57 47.0 3.19e-01 92.6% 46.8%
3424090 109.4.1.362 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1,TPR_8 0.56 47.0 3.56e-01 100.0% 38.9%