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IMGVR_UViG_2684622505_000001-2684622505-2684646808
Arc-VirIMGVR_UViG_2684622505_000001-2684622505-2684646808
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-78
Domain cluster:
rep: IMGVR_UViG_3300018407_000279-3300018407-Ga0187900_10143477__D2-72
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3f6zB01 | 2.40.128.200 | Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor | 0.66 | 48.0 | 4.79e-01 | 76.6% | 100.0% |
| 5mj6A03 | 2.60.40.1910 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.64 | 40.0 | 3.95e-01 | 85.7% | 58.7% |
| 3zoqC00 | 6.20.250.30 | Special › Other non-globular › Double Stranded RNA Binding Domain › | 0.64 | 39.0 | 4.58e-01 | 87.0% | 90.6% |
| 3cm1A00 | 2.30.31.20 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB | 0.63 | 49.0 | 4.08e-01 | 84.4% | 77.9% |
| 4aipC02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.60 | 43.0 | 2.59e-01 | 75.3% | 30.5% |
| 3buuB00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.60 | 42.0 | 3.06e-01 | 74.0% | 39.1% |
| 3doaA01 | 2.30.310.10 | Mainly Beta › Roll › ibrinogen binding protein from staphylococcus aureus fold › ibrinogen binding protein from staphylococcus aureus domain | 0.59 | 44.0 | 3.52e-01 | 79.2% | 41.2% |
| 3ef2A02 | 3.30.460.70 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › | 0.59 | 49.0 | 4.10e-01 | 93.5% | 80.4% |
| 2ovsA00 | 2.40.128.380 | Mainly Beta › Beta Barrel › Lipocalin › T3SS negative regulator GrlR | 0.59 | 44.0 | 3.85e-01 | 80.5% | 87.3% |
| 2xe4A01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.58 | 44.0 | 2.88e-01 | 83.1% | 31.2% |
| 1e5tA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.58 | 44.0 | 2.86e-01 | 81.8% | 31.9% |
| 1jkmA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.58 | 43.0 | 2.74e-01 | 77.9% | 28.5% |
| 1pbyA02 | 2.40.128.120 | Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 | 0.58 | 44.0 | 3.95e-01 | 81.8% | 97.2% |
| 4fgoA00 | 3.10.620.30 | Alpha Beta › Roll › C8orf32 fold › | 0.57 | 51.0 | 3.88e-01 | 100.0% | 49.7% |
| 1ylnA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.57 | 41.0 | 3.62e-01 | 81.8% | 51.8% |
| 3bbaA00 | 3.90.70.50 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Streptopain (SpeB) | 0.56 | 47.0 | 3.33e-01 | 93.5% | 78.0% |
| 2f4nB02 | 2.40.30.90 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like | 0.56 | 41.0 | 3.91e-01 | 80.5% | 72.3% |
| 1h7zA00 | 2.60.90.10 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain | 0.55 | 44.0 | 3.29e-01 | 88.3% | 35.1% |
| 2hdwA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.55 | 44.0 | 3.17e-01 | 88.3% | 47.4% |
| 1uzxA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.54 | 42.0 | 3.51e-01 | 85.7% | 67.1% |
| 1uhzA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.54 | 36.0 | 3.46e-01 | 72.7% | 58.4% |
| 7f79A01 | 3.40.50.10860 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 | 0.54 | 41.0 | 3.25e-01 | 83.1% | 75.9% |
| 3hlkA01 | 2.60.40.2240 | Mainly Beta › Sandwich › Immunoglobulin-like › Acyl-CoA thioester hydrolase/BAAT N-terminal domain | 0.54 | 42.0 | 3.58e-01 | 88.3% | 66.7% |
| 1cyyA02 | 2.70.20.10 | Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 | 0.53 | 46.0 | 3.88e-01 | 94.8% | 96.0% |
| 2ptfA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.53 | 41.0 | 3.42e-01 | 97.4% | 45.6% |
| 5z6pA01 | 2.60.120.430 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin | 0.53 | 44.0 | 3.45e-01 | 96.1% | 68.5% |
| 3pjyA00 | 2.60.120.1140 | Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF192 | 0.52 | 41.0 | 3.52e-01 | 87.0% | 98.4% |
| 3zpeA00 | 2.60.90.50 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › | 0.52 | 37.0 | 3.14e-01 | 76.6% | 52.9% |
| 4xrtA02 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.52 | 40.0 | 3.26e-01 | 87.0% | 65.6% |
| 1bvuA01 | 3.40.50.10860 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 | 0.52 | 39.0 | 3.16e-01 | 80.5% | 65.1% |
| 1zt4C01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.52 | 37.0 | 2.91e-01 | 77.9% | 82.7% |
| 3k7cA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 29.0 | 2.62e-01 | 76.6% | 37.0% |
| 3liuA01 | 2.60.40.3160 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 36.0 | 3.24e-01 | 84.4% | 50.0% |
| 3n91A02 | 2.40.128.420 | Mainly Beta › Beta Barrel › Lipocalin › | 0.51 | 40.0 | 3.41e-01 | 88.3% | 65.4% |
| 7emfR01 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.51 | 42.0 | 3.29e-01 | 93.5% | 70.3% |
| 2rceA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.51 | 37.0 | 3.33e-01 | 96.1% | 55.7% |
| 3kf3A02 | 2.60.120.560 | Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 | 0.50 | 41.0 | 3.25e-01 | 93.5% | 79.1% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4954568 | 219.1.1.165 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C71 | 0.81 | 69.0 | 5.67e-01 | 97.4% | 53.8% |
| 3659202 | 1.1.11.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain | 0.65 | 37.0 | 3.71e-01 | 75.3% | 53.8% |
| 4945617 | 219.1.1.13 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core | 0.65 | 56.0 | 4.41e-01 | 94.8% | 86.9% |
| 5078205 | 219.1.1.13 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core | 0.63 | 55.0 | 4.22e-01 | 94.8% | 93.5% |
| 4007508 | 3115.6.1.2 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 | 0.63 | 38.0 | 4.55e-01 | 88.3% | 92.0% |
| 169848 | 9.11.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like › MliC | 0.62 | 49.0 | 4.57e-01 | 83.1% | 89.2% |
| 4930890 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.62 | 40.0 | 4.11e-01 | 83.1% | 68.0% |
| 3373176 | 3459.1.1.3 ↗ | beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › DUF868 | 0.60 | 47.0 | 3.90e-01 | 85.7% | 96.4% |
| 3287357 | 3115.3.1.0 ↗ | a+b two layers › GP2-like › P56 › P56 | 0.60 | 41.0 | 4.61e-01 | 81.8% | 93.2% |
| 4018795 | 220.1.1.43 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › SIN1_PH | 0.59 | 49.0 | 4.20e-01 | 92.2% | 74.2% |
| 3704372 | 219.1.1.97 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CEPT76_peptidase | 0.58 | 53.0 | 3.64e-01 | 100.0% | 70.4% |
| 3403157 | 219.1.1.97 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CEPT76_peptidase | 0.57 | 52.0 | 3.69e-01 | 100.0% | 74.8% |
| 3057477 | 220.1.1.146 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_NDK7_N | 0.57 | 47.0 | 4.46e-01 | 89.6% | 83.5% |
| 4047703 | 71.1.1.2 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA | 0.57 | 43.0 | 3.42e-01 | 81.8% | 76.4% |
| 3263571 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.57 | 47.0 | 3.61e-01 | 90.9% | 67.4% |
| 5029261 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.55 | 48.0 | 3.95e-01 | 100.0% | 61.3% |
| 4188272 | 71.1.1.3 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB | 0.55 | 42.0 | 3.44e-01 | 85.7% | 98.7% |
| 3988163 | 2492.1.1.1 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 | 0.55 | 43.0 | 3.64e-01 | 96.1% | 47.9% |
| 3744119 | 868.1.1.3 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med20 | 0.55 | 44.0 | 3.40e-01 | 92.2% | 79.8% |
| 5747 | 4007.1.1.1 ↗ | a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › Transcrip_reg | 0.55 | 37.0 | 4.20e-01 | 85.7% | 98.1% |
| 4373556 | 4252.1.1.0 ↗ | beta barrels › AttH-like › AttH-like › AttH-like | 0.54 | 42.0 | 3.19e-01 | 84.4% | 81.1% |
| 3714657 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.54 | 43.0 | 3.50e-01 | 89.6% | 63.9% |
| 366302 | 11.1.1.70 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Bile_Hydr_Trans | 0.54 | 42.0 | 3.58e-01 | 88.3% | 66.2% |
| 3164980 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.53 | 45.0 | 3.81e-01 | 93.5% | 70.3% |
| 4958701 | 1.1.5.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N | 0.53 | 40.0 | 3.47e-01 | 100.0% | 48.1% |
| 4938346 | 1.1.5.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N | 0.53 | 40.0 | 3.38e-01 | 97.4% | 45.7% |
| 1769389 | 5084.5.3.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel | 0.53 | 38.0 | 2.32e-01 | 76.6% | 29.7% |
| 2429645 | 10.32.1.167 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Agarase_CBM | 0.53 | 44.0 | 3.43e-01 | 96.1% | 67.0% |
| 3250163 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 42.0 | 3.99e-01 | 89.6% | 82.1% |
| 3280574 | 1.1.5.15 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › F420H2_quin_red | 0.52 | 43.0 | 3.56e-01 | 94.8% | 50.0% |
| 3525900 | 11.1.1.70 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Bile_Hydr_Trans | 0.52 | 41.0 | 3.54e-01 | 88.3% | 73.1% |
| 3449628 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.51 | 39.0 | 3.43e-01 | 97.4% | 54.8% |
| 4083603 | 71.1.1.3 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB | 0.51 | 38.0 | 3.08e-01 | 83.1% | 89.1% |
| 3957192 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.51 | 37.0 | 3.22e-01 | 96.1% | 48.8% |
| 4957722 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.50 | 39.0 | 3.23e-01 | 84.4% | 94.2% |
| 3874979 | 11.1.1.70 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Bile_Hydr_Trans | 0.50 | 42.0 | 3.59e-01 | 93.5% | 80.8% |