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IMGVR_UViG_2684622505_000002-2684622505-2684645325

Arc-Vir

IMGVR_UViG_2684622505_000002-2684622505-2684645325

Identity

Kingdom:
archaea

Quality

81.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-86
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14367.13 best DUF4411 43.6 3.80e-11 96.4% 43.1%
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3h87B00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.72 62.0 5.25e-01 100.0% 58.0%
1v8oH00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.63 54.0 4.66e-01 100.0% 59.6%
1o4wA00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.57 47.0 4.14e-01 91.7% 64.0%
7wbtA02 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.54 42.0 2.68e-01 95.2% 16.0%
7p5hB03 1.20.1440.230 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain 0.50 33.0 3.28e-01 73.8% 62.9%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5075508 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.72 64.0 5.48e-01 100.0% 62.3%
5079341 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.72 64.0 5.50e-01 100.0% 62.3%
3952256 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.72 62.0 5.23e-01 100.0% 57.1%
3287957 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.71 60.0 5.11e-01 100.0% 58.2%
3954988 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.70 60.0 5.34e-01 100.0% 65.8%
3953275 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.70 59.0 5.04e-01 100.0% 57.8%
3283928 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.70 62.0 5.31e-01 100.0% 69.6%
4955518 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.69 61.0 5.27e-01 100.0% 68.1%
4967492 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.68 61.0 5.30e-01 100.0% 68.5%
5050003 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.68 60.0 5.17e-01 100.0% 70.4%
4967814 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.68 60.0 5.16e-01 100.0% 68.1%
4966392 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.67 59.0 4.95e-01 100.0% 57.2%
4966357 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.67 59.0 4.95e-01 100.0% 60.0%
4968785 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.67 59.0 4.85e-01 100.0% 56.8%
5039427 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.66 60.0 5.23e-01 100.0% 67.2%
5012644 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.66 58.0 4.79e-01 100.0% 61.9%
4992805 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.65 56.0 4.80e-01 100.0% 62.1%
5083788 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.62 56.0 4.80e-01 100.0% 70.7%
5016522 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.61 51.0 4.28e-01 100.0% 53.3%
4964119 300.1.1.18 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › FilR1_middle 0.60 42.0 3.48e-01 91.7% 39.4%
5068529 2006.1.4.13 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_9 0.59 50.0 4.36e-01 91.7% 61.6%
5059976 2006.1.4.13 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_9 0.59 48.0 4.31e-01 91.7% 63.0%
3428701 2006.1.4.6 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › Fcf1 0.58 49.0 3.93e-01 92.9% 51.5%
3482158 2006.1.4.6 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › Fcf1 0.57 49.0 3.90e-01 95.2% 51.2%
3525340 2006.1.4.6 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › Fcf1 0.56 47.0 3.86e-01 91.7% 52.9%
5001378 7512.1.1.30 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.54 44.0 3.33e-01 92.9% 47.0%
4341298 247.1.1.40 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › DRMBL, Anti-Pycsar_Apyc1 0.52 45.0 3.02e-01 100.0% 36.4%
2664672 247.1.1.9 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › DRMBL 0.51 45.0 2.98e-01 100.0% 36.5%