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IMGVR_UViG_2684622505_000002-2684622505-2684645409
Arc-VirIMGVR_UViG_2684622505_000002-2684622505-2684645409
Identity
- Kingdom:
- archaea
Quality
81.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-56
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2bskB00 | 1.10.287.810 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains | 0.66 | 57.0 | 5.44e-01 | 98.2% | 86.2% |
| 3vm9A02 | 6.10.140.2110 | Special › Helix non-globular › Helix Hairpins › | 0.64 | 49.0 | 4.96e-01 | 85.7% | 84.2% |
| 1br0A00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.62 | 51.0 | 4.06e-01 | 92.9% | 47.5% |
| 3txsC01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.62 | 49.0 | 4.55e-01 | 94.6% | 68.0% |
| 6j8eA01 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.59 | 46.0 | 3.83e-01 | 92.9% | 46.2% |
| 1qr0A01 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.58 | 40.0 | 3.20e-01 | 82.1% | 33.6% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2075013 | 601.2.1.2 ↗ | alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes › 7tm_1,Cytochrom_B562 | 0.64 | 51.0 | 4.51e-01 | 89.3% | 61.9% |
| 3710152 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.62 | 52.0 | 4.87e-01 | 96.4% | 75.7% |
| 4976290 | 192.1.1.0 ↗ | alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain | 0.57 | 42.0 | 3.84e-01 | 94.6% | 58.7% |
D2
medium
residues 57-114
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1kblA05 | 1.20.80.30 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.70 | 54.0 | 4.72e-01 | 84.5% | 92.1% |
| 6u26A01 | 3.30.70.80 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9 | 0.65 | 47.0 | 4.09e-01 | 75.9% | 60.2% |
| 2dznF00 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.63 | 44.0 | 4.15e-01 | 72.4% | 73.9% |
| 2lfhA00 | 4.10.280.10 | Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain | 0.62 | 45.0 | 4.31e-01 | 86.2% | 67.6% |
| 2l09A01 | 1.10.8.550 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Proto-chlorophyllide reductase 57 kD subunit B | 0.62 | 38.0 | 4.03e-01 | 70.7% | 69.2% |
| 3brqB01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.60 | 46.0 | 3.56e-01 | 84.5% | 88.6% |
| 2z3xA00 | 6.10.10.80 | Special › Helix non-globular › Helicase, Ruva Protein; domain 3 › Small, acid-soluble spore protein, alpha/beta type-like | 0.58 | 40.0 | 4.10e-01 | 74.1% | 75.0% |
| 4c2dA02 | 1.10.101.10 | Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD | 0.57 | 40.0 | 3.68e-01 | 86.2% | 52.9% |
| 2l3wA01 | 1.10.3130.20 | Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › Phycobilisome linker domain | 0.55 | 44.0 | 3.60e-01 | 98.3% | 76.6% |
| 4i5jA02 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.53 | 40.0 | 3.03e-01 | 79.3% | 52.9% |
| 8b6jF01 | 1.10.287.20 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain | 0.52 | 34.0 | 3.28e-01 | 100.0% | 56.7% |
| 1sjiA03 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.52 | 42.0 | 3.35e-01 | 89.7% | 78.2% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4978135 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.92 | 69.0 | 4.98e-01 | 82.8% | 31.7% |
| 3943133 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.84 | 56.0 | 6.27e-01 | 72.4% | 88.9% |
| 4113879 | 1.1.7.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L3 | 0.80 | 61.0 | 3.86e-01 | 81.0% | 18.1% |
| 3699757 | 632.18.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › hypothetical protein PA2901 › hypothetical protein PA2901 | 0.75 | 65.0 | 6.07e-01 | 93.1% | 85.7% |
| 5009943 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.74 | 61.0 | 4.41e-01 | 93.1% | 33.1% |
| 3219558 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.73 | 44.0 | 4.02e-01 | 74.1% | 46.7% |
| 3285943 | 629.1.1.1 ↗ | alpha bundles › TorD-like (Pfam 06192) › TorD-like (Pfam 06192) › TorD-like (Pfam 06192) › Nitrate_red_del | 0.72 | 54.0 | 3.77e-01 | 81.0% | 29.2% |
| 4975876 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.70 | 53.0 | 3.20e-01 | 81.0% | 22.2% |
| 3222971 | 207.1.1.52 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 | 0.69 | 47.0 | 3.02e-01 | 70.7% | 25.0% |
| 3811150 | 3525.1.1.1 ↗ | alpha arrays › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › BET | 0.69 | 50.0 | 4.62e-01 | 77.6% | 61.3% |
| 3386111 | 6130.1.1.0 ↗ | alpha complex topology › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain | 0.67 | 46.0 | 4.32e-01 | 72.4% | 90.0% |
| 3821975 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.65 | 45.0 | 4.23e-01 | 70.7% | 75.7% |
| 4963148 | 148.1.3.19 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 | 0.63 | 44.0 | 3.77e-01 | 72.4% | 55.6% |
| 3260331 | 145.1.1.2 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › Elongin_A | 0.63 | 50.0 | 4.33e-01 | 91.4% | 56.8% |
| 5028635 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.59 | 49.0 | 3.78e-01 | 98.3% | 48.3% |
| 1679631 | 142.1.1.8 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › PhyR_sigma2 | 0.58 | 40.0 | 3.69e-01 | 70.7% | 62.7% |
| 3177669 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.55 | 48.0 | 2.96e-01 | 100.0% | 67.9% |
| 3786619 | 103.4.1.2 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › TFIIS_M | 0.53 | 44.0 | 3.72e-01 | 91.4% | 81.1% |