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IMGVR_UViG_2684622506_000001-2684622506-2684651320

Arc-Vir

IMGVR_UViG_2684622506_000001-2684622506-2684651320

Identity

Kingdom:
archaea

Quality

89.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-75
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3jb9X01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.78 68.0 4.52e-01 100.0% 28.4%
7pliF02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.74 65.0 4.79e-01 100.0% 51.0%
1q0qA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.73 58.0 4.30e-01 100.0% 33.3%
1wp9A02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.72 63.0 4.69e-01 100.0% 56.4%
6jimB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.72 61.0 4.56e-01 100.0% 38.5%
3wxmB02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.71 61.0 4.87e-01 100.0% 58.2%
1lqaA00 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.71 60.0 3.76e-01 100.0% 48.8%
3obwA02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.71 61.0 4.90e-01 100.0% 86.4%
4ceiB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.70 58.0 4.25e-01 100.0% 37.8%
1n5dA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.70 57.0 3.67e-01 93.1% 20.5%
4xk2B00 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.69 59.0 3.75e-01 100.0% 25.6%
2o2pA02 3.40.309.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 2 › Aldehyde Dehydrogenase; Chain A, domain 2 0.68 61.0 4.19e-01 100.0% 74.5%
1ve3A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.67 57.0 3.97e-01 100.0% 43.9%
8kcaB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.67 59.0 4.25e-01 100.0% 46.2%
5ereA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.66 56.0 4.34e-01 98.3% 54.7%
3kksB00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.66 53.0 3.93e-01 100.0% 34.2%
1sqgA04 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.66 51.0 3.64e-01 89.7% 40.4%
2ggsA02 3.90.25.10 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 0.66 49.0 4.67e-01 94.8% 69.1%
2zatA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.65 55.0 3.60e-01 93.1% 23.1%
4fc7D00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.65 54.0 3.55e-01 96.6% 32.4%
2b3tA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.65 55.0 3.95e-01 100.0% 45.8%
1ae1A00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.65 54.0 3.58e-01 93.1% 23.7%
2rhcA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.65 54.0 3.56e-01 94.8% 22.6%
2kpoA00 3.40.50.11230 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.65 54.0 4.41e-01 94.8% 50.0%
3qokA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.64 55.0 3.56e-01 100.0% 48.1%
5m1pB00 3.30.420.240 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.63 54.0 3.85e-01 100.0% 44.4%
2uv8A01 3.90.25.70 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › 0.63 51.0 4.52e-01 96.6% 68.8%
4nbrA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.63 51.0 3.37e-01 93.1% 22.0%
3vpbA01 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.62 44.0 3.64e-01 86.2% 42.6%
5eswB00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.62 53.0 3.80e-01 100.0% 37.6%
2ixaA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.62 50.0 3.64e-01 100.0% 31.4%
2f7lA03 3.40.120.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 0.62 53.0 4.49e-01 98.3% 65.3%
4ms4B02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.62 52.0 3.79e-01 100.0% 42.2%
6r8gA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.61 53.0 3.97e-01 100.0% 39.4%
2c31A01 3.40.50.970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.61 49.0 3.53e-01 94.8% 42.6%
2wbnA00 3.30.420.280 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.61 52.0 3.76e-01 100.0% 81.5%
6whjD00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.60 50.0 3.25e-01 100.0% 37.4%
2o1sA02 3.40.50.970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.60 49.0 3.58e-01 96.6% 32.2%
7ec2A01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.59 46.0 3.57e-01 100.0% 35.8%
1iqpA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 48.0 3.57e-01 96.6% 47.0%
1amuA02 3.40.50.980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 49.0 3.73e-01 98.3% 53.6%
2nxwA01 3.40.50.970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.57 46.0 3.42e-01 100.0% 60.6%
3bl4A02 3.40.970.30 Alpha Beta › 3-Layer(aba) Sandwich › Ribonuclease HI; Chain A › yp_829618.1 like domains 0.57 38.0 4.02e-01 74.1% 83.3%
2rjnA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.56 45.0 3.63e-01 100.0% 42.2%
3vasA01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.56 48.0 3.14e-01 100.0% 54.3%
1b6sA01 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 39.0 3.67e-01 74.1% 84.3%
2panA01 3.40.50.970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.55 45.0 3.37e-01 98.3% 47.1%
1dgmA01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.54 44.0 2.91e-01 94.8% 47.5%
3ke3A02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.54 46.0 3.09e-01 100.0% 29.7%
1b1xA03 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.52 45.0 3.11e-01 94.8% 50.0%
3i3wA03 3.40.120.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 0.52 42.0 3.86e-01 100.0% 69.5%
2bfwA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.51 41.0 3.07e-01 100.0% 37.6%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5005831 2004.1.1.186 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_12 0.81 70.0 4.86e-01 100.0% 30.0%
4135086 2003.1.1.33 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DXP_reductoisom 0.73 58.0 4.08e-01 100.0% 27.8%
3247325 2007.1.2.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.72 61.0 4.54e-01 98.3% 56.2%
2512657 2004.1.1.62 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Viral_helicase1 0.72 60.0 4.39e-01 100.0% 34.0%
3175895 2002.1.1.13 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Aldo_ket_red 0.72 62.0 3.86e-01 100.0% 23.2%
5024451 2002.1.1.13 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Aldo_ket_red 0.71 62.0 3.86e-01 100.0% 23.4%
3731665 2002.1.1.13 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Aldo_ket_red 0.71 62.0 3.85e-01 100.0% 23.3%
4266762 2002.1.1.13 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Aldo_ket_red 0.71 61.0 3.76e-01 100.0% 21.9%
3945789 2002.1.1.13 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Aldo_ket_red 0.70 60.0 3.79e-01 100.0% 23.6%
3967131 2002.1.1.13 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Aldo_ket_red 0.70 60.0 3.80e-01 100.0% 24.5%
4956540 7597.1.1.0 a/b three-layered sandwiches › Endolysin C-terminal domain › Endolysin C-terminal domain › Endolysin C-terminal domain 0.68 59.0 5.29e-01 100.0% 78.8%
4452496 2003.1.1.33 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DXP_reductoisom 0.68 52.0 3.74e-01 100.0% 27.0%
5083931 2484.1.1.77 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C 0.67 58.0 4.20e-01 100.0% 46.9%
4562891 3698.1.1.0 beta sandwiches › Arginine methyltransferase oligomerization subdomain › Arginine methyltransferase oligomerization subdomain › Arginine methyltransferase oligomerization subdomain 0.67 58.0 3.64e-01 100.0% 29.8%
4995858 2007.1.5.2 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like › CCG 0.67 56.0 4.51e-01 100.0% 50.4%
4328062 3008.1.1.0 a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.66 53.0 5.28e-01 91.4% 93.3%
4972935 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.66 57.0 4.07e-01 100.0% 78.3%
4983397 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.63 49.0 3.58e-01 93.1% 29.1%
None 0.63 53.0 3.80e-01 100.0% 31.1%
3607891 2484.1.1.16 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII 0.63 51.0 3.45e-01 94.8% 24.4%
3964365 7573.1.1.1 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran 0.62 53.0 3.81e-01 100.0% 37.8%
4837879 247.1.1.0 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase 0.62 51.0 3.56e-01 100.0% 34.7%
5072832 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.61 50.0 3.70e-01 93.1% 33.9%
3210952 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.61 51.0 3.83e-01 100.0% 36.1%
4224328 2003.1.5.107 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › AdoMet_MTase 0.61 51.0 3.50e-01 100.0% 46.4%
3918426 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.60 45.0 3.71e-01 89.7% 42.3%
3672736 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.60 50.0 3.69e-01 100.0% 34.3%
3577900 2003.1.5.52 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_PK 0.59 49.0 3.33e-01 100.0% 42.7%
3352391 2484.1.1.103 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Tab2-like_N 0.59 47.0 3.81e-01 100.0% 43.1%
4140368 2003.1.1.3 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short 0.59 51.0 3.41e-01 100.0% 62.4%
4996625 874.1.1.0 a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain 0.59 47.0 3.17e-01 89.7% 46.8%
2605723 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.58 48.0 3.90e-01 100.0% 63.8%
3955767 323.1.1.37 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding, Condensation 0.57 47.0 2.57e-01 100.0% 7.1%
3193540 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.57 44.0 3.29e-01 89.7% 51.5%
3165324 2003.1.10.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain 0.57 39.0 3.70e-01 72.4% 82.9%
3785337 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.57 47.0 3.41e-01 100.0% 44.2%
4818507 874.1.1.1 a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain › SMC_hinge 0.56 46.0 3.88e-01 93.1% 77.8%
3934186 874.1.1.1 a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain › SMC_hinge 0.55 45.0 3.04e-01 93.1% 47.2%
4972065 2007.6.1.4 a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › SIS 0.55 45.0 3.35e-01 98.3% 34.9%
3701013 2003.1.10.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain 0.55 46.0 3.81e-01 100.0% 51.8%
5076515 7573.1.1.0 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like 0.51 41.0 3.11e-01 100.0% 52.2%
2439650 2003.2.1.1 a/b three-layered sandwiches › Rossmann-like › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Molybdopterin 0.50 42.0 3.82e-01 96.6% 93.8%
3170282 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.50 43.0 3.25e-01 100.0% 73.3%
4933426 874.1.1.0 a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain 0.50 36.0 2.83e-01 77.6% 63.7%