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IMGVR_UViG_2684622506_000001-2684622506-2684651336
Arc-VirIMGVR_UViG_2684622506_000001-2684622506-2684651336
Identity
- Kingdom:
- archaea
Quality
72.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-95
Domain cluster:
rep: IMGVR_UViG_3300036348_000092-3300036348-Ga0400284_001644_6540_6839__D25-99
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6hhuA01 | 2.60.40.1220 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.66 | 42.0 | 4.60e-01 | 100.0% | 79.5% |
| 2kt2A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 38.0 | 4.31e-01 | 98.9% | 84.1% |
| 2wbmA03 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 35.0 | 3.94e-01 | 93.6% | 75.7% |
| 1wg1A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.59 | 36.0 | 4.01e-01 | 97.9% | 80.3% |
| 1ywxA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.58 | 34.0 | 3.43e-01 | 76.6% | 56.5% |
| 1cc8A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 34.0 | 3.83e-01 | 98.9% | 77.8% |
| 2b9dA01 | 3.30.160.330 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.57 | 24.0 | 3.20e-01 | 92.6% | 79.5% |
| 1whyA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.57 | 35.0 | 3.92e-01 | 97.9% | 80.6% |
| 2kzfA00 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.56 | 39.0 | 3.83e-01 | 73.4% | 70.8% |
| 6u9hF02 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.56 | 33.0 | 3.57e-01 | 94.7% | 68.8% |
| 2rt3A00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.55 | 35.0 | 3.52e-01 | 96.8% | 61.9% |
| 3b82A06 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 34.0 | 3.21e-01 | 92.6% | 48.8% |
| 1vx4407 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 33.0 | 3.76e-01 | 94.7% | 87.0% |
| 1owxA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.52 | 35.0 | 3.36e-01 | 96.8% | 56.6% |
| 4lvnP00 | 3.30.70.2380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 35.0 | 3.71e-01 | 98.9% | 80.2% |
| 2eabB03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.52 | 40.0 | 3.66e-01 | 93.6% | 63.9% |
| 2xmjA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 31.0 | 3.57e-01 | 95.7% | 90.5% |
| 2lpuA00 | 3.30.1460.50 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.50 | 38.0 | 3.36e-01 | 83.0% | 89.9% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3602442 | 1.1.16.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain | 0.65 | 60.0 | 5.69e-01 | 100.0% | 89.1% |
| 3752343 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.63 | 35.0 | 4.31e-01 | 91.5% | 90.9% |
| 3332869 | 304.3.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA | 0.61 | 26.0 | 3.48e-01 | 71.3% | 74.0% |
| 4980882 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.61 | 41.0 | 4.21e-01 | 98.9% | 72.2% |
| 4980060 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.59 | 37.0 | 3.85e-01 | 98.9% | 68.2% |
| 4148490 | 327.10.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › RBFA | 0.59 | 42.0 | 3.92e-01 | 74.5% | 65.8% |
| 4944201 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.58 | 36.0 | 4.00e-01 | 98.9% | 82.9% |
| 3972593 | 107.1.1.12 ↗ | alpha arrays › Cytochrome c-like › Cytochrome c › Cytochrome c › RoxA-like_Cyt-c | 0.57 | 45.0 | 2.88e-01 | 89.4% | 72.0% |
| 3264200 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.57 | 36.0 | 3.64e-01 | 95.7% | 62.1% |
| 4929978 | 304.4.1.1 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg | 0.57 | 37.0 | 3.67e-01 | 98.9% | 62.0% |
| 3525258 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.56 | 35.0 | 3.51e-01 | 96.8% | 60.0% |
| 3679321 | 256.1.1.3 ↗ | a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like › Methyltransf_29 | 0.56 | 30.0 | 3.01e-01 | 76.6% | 49.0% |
| 4025701 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.55 | 35.0 | 3.57e-01 | 94.7% | 65.6% |
| 4010459 | 310.3.1.4 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › GspL_C | 0.54 | 35.0 | 3.32e-01 | 75.5% | 51.7% |
| 3951894 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.54 | 40.0 | 4.05e-01 | 100.0% | 80.0% |
| 3575428 | 304.9.1.36 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_10 | 0.53 | 34.0 | 3.35e-01 | 97.9% | 58.1% |
| 3783484 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.53 | 35.0 | 3.35e-01 | 94.7% | 57.3% |
| 4002369 | 304.47.1.0 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain | 0.53 | 37.0 | 3.84e-01 | 73.4% | 85.6% |
| 4178967 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.53 | 37.0 | 4.06e-01 | 97.9% | 93.3% |
| 5030033 | 327.11.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) | 0.52 | 33.0 | 3.73e-01 | 88.3% | 90.8% |
| 3209631 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.52 | 33.0 | 3.55e-01 | 94.7% | 79.5% |
| 4114985 | 304.7.1.2 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Inhibitor_I9 | 0.52 | 36.0 | 3.68e-01 | 93.6% | 72.6% |
| 4634282 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.51 | 32.0 | 3.71e-01 | 94.7% | 95.2% |
| 3515089 | 304.3.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA | 0.50 | 31.0 | 3.46e-01 | 92.6% | 83.8% |