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IMGVR_UViG_2684622506_000001-2684622506-2684651357

Arc-Vir

IMGVR_UViG_2684622506_000001-2684622506-2684651357

Identity

Kingdom:
archaea

Quality

72.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-65
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1t98A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 43.0 3.84e-01 72.6% 46.0%
2go7A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.66 45.0 4.42e-01 71.0% 97.0%
3g2bA00 1.10.10.1150 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) 0.66 38.0 3.34e-01 91.9% 40.0%
3crmA02 1.10.287.890 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 0.63 56.0 5.06e-01 100.0% 85.7%
1is8A01 1.10.286.10 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › GTP cyclohydrolase I, N-terminal domain 0.62 42.0 4.30e-01 71.0% 73.3%
7s0rB01 1.20.81.20 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › 0.60 48.0 4.54e-01 87.1% 86.8%
2qneA01 3.20.20.480 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Trimethylamine methyltransferase-like 0.58 51.0 3.03e-01 98.4% 77.5%
3h0dB02 1.10.1200.150 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Transcriptional repressor of class III stress genes, C-terminal domain 0.58 51.0 4.67e-01 100.0% 88.9%
1ym3A00 3.40.1050.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-carbonic Anhydrase; Chain A › Carbonic anhydrase 0.57 48.0 3.51e-01 100.0% 61.7%
2nmlA00 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.56 42.0 3.59e-01 96.8% 50.0%
1yfmA01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.56 48.0 3.80e-01 95.2% 55.6%
1nv8B01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.55 44.0 4.21e-01 87.1% 88.7%
1wnvB00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.55 48.0 3.34e-01 100.0% 93.3%
1tc3C00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.55 37.0 4.05e-01 98.4% 86.3%
2fp1B00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.55 41.0 3.08e-01 82.3% 50.6%
5dcaA11 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 41.0 3.57e-01 100.0% 51.4%
2pmrA00 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.53 41.0 3.90e-01 85.5% 85.5%
1v4aA03 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.51 45.0 3.39e-01 98.4% 79.7%
6vydA01 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.51 44.0 2.85e-01 96.8% 96.0%
2nyvA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.51 32.0 3.21e-01 74.2% 60.9%
4uz0A00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.51 43.0 3.90e-01 100.0% 70.1%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3880198 197.1.1.1 ↗ alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › FERM_M 0.71 49.0 3.78e-01 100.0% 33.3%
3967924 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 50.0 4.96e-01 96.8% 72.3%
3266823 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.68 39.0 4.15e-01 88.7% 65.5%
3709879 181.1.1.0 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins 0.63 49.0 4.64e-01 83.9% 88.0%
3366093 6013.1.1.0 ↗ alpha arrays › C-terminal domains of CstF-64 › C-terminal domains of CstF-64 › C-terminal domains of CstF-64 0.63 43.0 4.38e-01 72.6% 73.3%
4934951 164.1.1.1 ↗ alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.62 39.0 3.43e-01 74.2% 44.4%
3479030 103.11.1.0 ↗ alpha arrays › RuvA-C › RMI1 N-terminal helical domain-related › RMI1 N-terminal helical domain-related 0.62 49.0 4.72e-01 87.1% 87.1%
3995159 197.1.1.1 ↗ alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › FERM_M 0.60 42.0 3.46e-01 96.8% 40.0%
4223269 101.1.10.50 ↗ alpha arrays › HTH › HTH › Cyclin-like › PF29928 0.60 46.0 3.47e-01 85.5% 35.0%
3488292 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.60 38.0 3.08e-01 90.3% 37.3%
4652008 181.2.1.1 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › CtsR dimerization domain › CtsR dimerization domain › CtsR_C 0.59 51.0 4.74e-01 98.4% 92.3%
3288545 191.1.1.1 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_1 0.59 51.0 3.91e-01 100.0% 90.0%
3930410 138.1.1.2 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › Rep_fac_C 0.58 49.0 4.30e-01 95.2% 89.5%
4016535 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.57 44.0 3.80e-01 83.9% 94.0%
5011971 164.1.1.1 ↗ alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.57 37.0 3.49e-01 71.0% 51.2%
5027497 632.6.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit 0.57 48.0 4.45e-01 93.5% 88.7%
4927512 164.1.1.1 ↗ alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.57 36.0 3.29e-01 71.0% 45.6%
1770472 605.1.1.3 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_2 0.56 39.0 4.23e-01 74.2% 93.9%
4281061 197.1.1.1 ↗ alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › FERM_M 0.54 45.0 3.76e-01 96.8% 98.3%
3328225 130.1.1.1 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.53 36.0 3.81e-01 91.9% 81.1%
3711237 632.1.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.53 41.0 3.85e-01 87.1% 92.5%
3928912 6126.1.1.0 ↗ alpha bundles › Helical domain in EHD2 › Helical domain in EHD2 › Helical domain in EHD2 0.52 36.0 3.01e-01 72.6% 77.3%
5007277 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.51 43.0 3.86e-01 93.5% 82.4%