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IMGVR_UViG_2684622506_000001-2684622506-2684651364

Arc-Vir

Identity

Accession:: IMGVR_UViG_2684622506_000001-2684622506-2684651364 ↗
Kingdom:: archaea

Quality

87.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-68

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF13240.12 best	Zn_Ribbon_1	27.7	2.40e-06	41.5%	95.7%

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1l8dA00	1.10.287.510	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin	0.69	54.0	4.27e-01	94.3%	42.7%
4wz0A00	3.30.40.10	Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger)	0.63	56.0	4.42e-01	100.0%	99.1%
3axsA01	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.58	47.0	2.85e-01	86.8%	15.8%
2y43A00	3.30.40.10	Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger)	0.57	44.0	3.72e-01	84.9%	70.5%
1kvdA00	4.10.420.10	Few Secondary Structures › Irregular › Smk Toxin, alpha chain › Smk Toxin, alpha chain	0.55	40.0	3.83e-01	84.9%	66.7%
3m7kA00	3.30.40.220	Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 ›	0.52	38.0	2.83e-01	81.1%	68.3%
2cshA01	3.30.160.60	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger	0.50	37.0	3.15e-01	79.2%	47.8%

ECOD (13)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4067548	386.1.1.79 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › UPF0547	0.78	60.0	5.98e-01	90.6%	78.2%
5059258	109.4.1.95 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2	0.76	57.0	3.66e-01	79.2%	28.6%
5067444	375.10.1.0 ↗	few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha	0.75	54.0	5.54e-01	75.5%	94.0%
4968690	109.4.1.3615 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Zn_Ribbon_1	0.66	51.0	3.33e-01	83.0%	87.0%
3806013	376.1.3.0 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger	0.65	59.0	5.34e-01	100.0%	100.0%
5051287	109.4.1.198 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_12	0.63	46.0	2.99e-01	84.9%	19.5%
4314985	377.1.1.15 ↗	few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › YacG	0.62	37.0	4.09e-01	81.1%	74.4%
3748183	375.1.1.4 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-RanBP	0.59	46.0	4.45e-01	84.9%	100.0%
3439790	601.1.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin	0.57	45.0	3.40e-01	94.3%	34.0%
3619960	386.1.1.0 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers	0.53	39.0	3.39e-01	94.3%	51.2%
4283998	375.10.1.2 ↗	few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DPOE	0.53	44.0	4.25e-01	90.6%	81.7%
3743904	375.10.1.2 ↗	few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DPOE	0.52	44.0	4.23e-01	94.3%	81.7%
4969954	207.2.1.0 ↗	beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like	0.50	40.0	2.36e-01	100.0%	36.8%