←Back to structures

IMGVR_UViG_2684622741_000001-2684622741-2685520622

Arc-Vir

Identity

Accession:: IMGVR_UViG_2684622741_000001-2684622741-2685520622 ↗
Kingdom:: archaea

Quality

81.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-87

PDB

Domain cluster: rep: IMGVR_UViG_3300028591_000123-3300028591-Ga0247611_1000024588__D20-124

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3bz5A02	2.60.40.1220	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.62	33.0	3.35e-01	76.5%	51.2%
4b6dB00	3.30.60.20	Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 ›	0.55	27.0	3.16e-01	100.0%	64.9%
2bzgA00	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.52	42.0	3.13e-01	90.1%	39.7%
7cayA01	2.30.130.40	Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like	0.51	44.0	4.18e-01	97.5%	79.0%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4605381	4186.1.1.1 ↗	beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p	0.56	34.0	3.42e-01	100.0%	59.5%
4214914	223.1.1.2 ↗	a+b three layers › Profilin-like › sensor domains › sensor domains › PAS	0.55	41.0	3.29e-01	81.5%	72.0%
4109849	4186.1.1.1 ↗	beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p	0.54	33.0	3.33e-01	100.0%	58.8%
4357055	2003.1.5.51 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TPMT	0.52	43.0	3.12e-01	91.4%	37.6%
5083501	1.1.9.0 ↗	beta barrels › cradle loop barrel › RIFT-related › PUA domain	0.51	43.0	4.25e-01	97.5%	98.9%
5069899	1.1.9.23 ↗	beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF473	0.51	44.0	3.89e-01	98.8%	79.2%
4967865	2003.1.5.0 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases	0.50	42.0	2.69e-01	91.4%	73.2%

D2 medium residues 95-226

PDB

Domain cluster: rep: IMGVR_UViG_2799112910_000001-2799112910-2800873627__D1-122

CATH (14)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2a3qA00	1.10.287.1080	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like	0.67	40.0	4.30e-01	89.4%	69.0%
7d1tA01	1.20.85.10	Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like	0.62	49.0	4.45e-01	85.6%	89.0%
2iakA01	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.60	42.0	3.62e-01	71.2%	64.1%
8ci9C01	2.60.120.330	Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain	0.58	50.0	3.88e-01	93.9%	87.4%
2q5zB00	1.10.287.1080	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like	0.57	34.0	3.91e-01	84.1%	81.9%
5jc3A02	1.20.1320.30	Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 ›	0.57	40.0	4.14e-01	94.7%	76.2%
3a7kB00	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.55	47.0	3.78e-01	91.7%	48.1%
7w9wA01	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.55	45.0	3.61e-01	88.6%	53.4%
3ay5A01	1.20.1420.10	Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain	0.54	40.0	4.05e-01	90.2%	76.7%
1hciA03	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.54	39.0	4.15e-01	76.5%	82.5%
1s35A02	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.53	36.0	3.99e-01	76.5%	83.6%
2f07B00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.53	44.0	3.86e-01	89.4%	92.3%
6tkyA03	1.20.58.740	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DOCK DHR2 domain, lobe C	0.53	37.0	3.91e-01	73.5%	81.1%
1s4eG02	3.30.70.890	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain	0.52	37.0	3.61e-01	94.7%	64.7%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3491731	174.1.1.1 ↗	few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin	0.68	39.0	3.94e-01	71.2%	55.6%
3883834	5050.1.1.22 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1_like	0.59	44.0	3.72e-01	79.5%	47.4%
3224284	603.3.1.0 ↗	alpha bundles › STAT-like › CAPPD, an extracellular domain of amyloid beta A4 protein › CAPPD, an extracellular domain of amyloid beta A4 protein	0.59	44.0	3.99e-01	77.3%	88.6%
3193158	3755.3.1.0 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin	0.57	54.0	4.06e-01	100.0%	67.1%
5072326	310.2.1.0 ↗	a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF	0.56	40.0	4.11e-01	73.5%	100.0%
3385460	5069.1.1.74 ↗	alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › UPF0093	0.52	43.0	4.21e-01	93.2%	96.7%
3958913	150.8.1.0 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PPE › PPE	0.51	38.0	3.46e-01	77.3%	56.7%