Back to structures

IMGVR_UViG_2706795009_000001-2706795009-2708591107

Arc-Vir

IMGVR_UViG_2706795009_000001-2706795009-2708591107

Identity

Kingdom:
archaea

Quality

79.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-55
PDB
CATH (58)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2a6hC05 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.70 51.0 4.56e-01 77.4% 74.7%
2a5hA03 6.20.120.40 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.69 40.0 3.86e-01 88.7% 50.0%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 56.0 5.56e-01 100.0% 89.1%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.68 55.0 4.77e-01 92.5% 100.0%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 53.0 5.24e-01 100.0% 84.5%
4k7zA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.65 55.0 3.68e-01 98.1% 62.5%
4dapA01 2.40.50.580 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.65 46.0 4.09e-01 77.4% 90.0%
3h27A00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.64 56.0 3.30e-01 100.0% 36.6%
5nslA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.64 55.0 3.78e-01 100.0% 63.3%
4c5wA01 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.64 51.0 4.20e-01 88.7% 85.6%
3vn5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.64 38.0 3.53e-01 83.0% 44.9%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.63 53.0 4.80e-01 100.0% 68.8%
1w2tA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.63 54.0 4.11e-01 100.0% 70.9%
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.62 45.0 4.65e-01 100.0% 86.0%
4b1bA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.62 51.0 3.06e-01 96.2% 62.0%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.62 46.0 4.67e-01 100.0% 88.0%
5xbfA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 51.0 4.40e-01 94.3% 95.5%
5yjwA00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.61 51.0 3.02e-01 96.2% 22.7%
3bdlA01 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 42.0 2.97e-01 71.7% 63.9%
3rp7A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 51.0 3.63e-01 96.2% 42.3%
6e20A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 51.0 3.94e-01 100.0% 87.1%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.60 47.0 4.44e-01 96.2% 72.7%
2vouB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 50.0 3.28e-01 96.2% 50.8%
3qjhA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 43.0 3.49e-01 79.2% 93.5%
4k22B01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 41.0 2.70e-01 73.6% 86.9%
3f4lA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.60 46.0 3.03e-01 83.0% 72.2%
1ci3M02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.59 47.0 4.59e-01 88.7% 84.5%
3ic8A01 3.40.30.110 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.59 47.0 3.44e-01 98.1% 29.4%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.59 40.0 3.26e-01 71.7% 45.0%
1awjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 42.0 3.82e-01 79.2% 92.2%
8cukB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 49.0 3.03e-01 94.3% 94.3%
2d9xA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 46.0 3.83e-01 94.3% 87.3%
2cduA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 48.0 3.52e-01 94.3% 59.6%
1a78A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 49.0 3.78e-01 100.0% 83.6%
4a53A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 45.0 4.40e-01 100.0% 79.0%
3j7yD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 47.0 4.27e-01 100.0% 69.1%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 45.0 4.19e-01 88.7% 91.3%
2ogqA01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.57 45.0 3.50e-01 90.6% 84.1%
2z4hA01 2.40.128.300 Mainly Beta › Beta Barrel › Lipocalin › NlpE, N-terminal domain 0.57 42.0 3.76e-01 81.1% 93.7%
3hr8A02 3.30.250.10 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain 0.56 39.0 3.51e-01 88.7% 52.0%
2b3yA05 3.20.19.10 Alpha Beta › Alpha-Beta Barrel › Aconitase; domain 4 › Aconitase, domain 4 0.54 42.0 2.88e-01 94.3% 92.3%
3cobC00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.54 42.0 2.59e-01 86.8% 85.0%
2wmmA02 3.30.70.3500 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MukB, hinge domain 0.54 39.0 3.11e-01 79.2% 72.6%
2mamA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 44.0 3.48e-01 100.0% 42.4%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.53 41.0 4.25e-01 98.1% 93.8%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 42.0 4.36e-01 98.1% 98.0%
4p5nA00 2.30.30.1060 Mainly Beta › Roll › SH3 type barrels. › 0.53 43.0 3.86e-01 90.6% 94.6%
3teeA02 2.30.30.760 Mainly Beta › Roll › SH3 type barrels. › 0.53 42.0 3.83e-01 94.3% 65.8%
5eo9A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 37.0 3.04e-01 77.4% 86.0%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 41.0 3.91e-01 100.0% 72.7%
1an9A02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.52 43.0 3.28e-01 100.0% 59.6%
2askA00 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.52 40.0 3.31e-01 86.8% 82.2%
4rs6A01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.52 41.0 3.24e-01 90.6% 95.8%
1iwmA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.51 42.0 3.04e-01 100.0% 84.7%
4n4iA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 38.0 3.41e-01 100.0% 52.2%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 40.0 3.69e-01 88.7% 97.1%
1y13A00 3.30.479.10 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD 0.50 41.0 3.03e-01 98.1% 56.4%
2qqrA02 3.10.330.70 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.50 40.0 4.03e-01 92.5% 100.0%
ECOD (73)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4018320 5.1.8.3 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 › WD40 0.70 55.0 3.70e-01 84.9% 24.7%
4019781 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.68 54.0 3.46e-01 88.7% 19.2%
4014861 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.67 54.0 3.47e-01 88.7% 20.4%
25624 4.1.1.45 beta barrels › SH3 › SH3 › SH3 › DUF903 0.66 53.0 5.37e-01 100.0% 96.2%
4400642 4.1.1.257 beta barrels › SH3 › SH3 › SH3 › Flag1_repress 0.66 52.0 4.53e-01 98.1% 55.3%
4013501 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.66 50.0 3.01e-01 83.0% 12.6%
135648 4.1.1.142 beta barrels › SH3 › SH3 › SH3 › Hfq_1 0.65 50.0 4.78e-01 100.0% 72.3%
5027750 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 51.0 5.12e-01 100.0% 89.1%
3935617 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.64 49.0 2.97e-01 83.0% 18.8%
4368811 4.1.1.364 beta barrels › SH3 › SH3 › SH3 › GatD_N 0.64 51.0 5.11e-01 100.0% 87.3%
5081442 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.63 52.0 4.85e-01 100.0% 72.9%
5028741 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 50.0 5.04e-01 96.2% 89.1%
4485519 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 46.0 3.74e-01 79.2% 57.3%
3954254 4.1.1.387 beta barrels › SH3 › SH3 › SH3 › SH3_Rv0428c 0.63 51.0 4.88e-01 100.0% 80.0%
5080336 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 49.0 4.71e-01 100.0% 78.1%
4646501 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 49.0 3.62e-01 98.1% 30.3%
5029405 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.62 49.0 4.90e-01 100.0% 87.3%
4139090 4.1.1.364 beta barrels › SH3 › SH3 › SH3 › GatD_N 0.62 49.0 4.92e-01 100.0% 87.3%
5015352 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 54.0 4.71e-01 100.0% 63.9%
4948433 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.62 51.0 4.82e-01 100.0% 75.0%
3602511 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 49.0 4.62e-01 98.1% 71.4%
4944045 4.17.1.2 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › Asparaginase 0.61 51.0 4.75e-01 100.0% 72.9%
4044269 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.61 50.0 4.68e-01 100.0% 71.4%
5056826 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.61 51.0 4.87e-01 100.0% 78.5%
4068333 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.61 50.0 4.78e-01 96.2% 78.5%
4147290 4.1.1.364 beta barrels › SH3 › SH3 › SH3 › GatD_N 0.61 47.0 4.43e-01 100.0% 70.8%
3839016 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.61 48.0 4.60e-01 100.0% 75.4%
3290899 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.61 47.0 4.40e-01 100.0% 68.6%
858452 4.1.1.476 beta barrels › SH3 › SH3 › SH3 › PF30873 0.61 48.0 4.15e-01 100.0% 53.1%
4214438 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.60 47.0 4.60e-01 100.0% 80.0%
4147366 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.60 47.0 4.84e-01 100.0% 95.8%
4432457 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.60 51.0 4.69e-01 100.0% 74.3%
4071824 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.59 48.0 4.44e-01 100.0% 73.3%
4093911 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.59 50.0 4.56e-01 100.0% 70.7%
4988761 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.59 49.0 4.14e-01 94.3% 97.8%
4252954 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.59 48.0 4.49e-01 100.0% 74.3%
5000741 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.58 48.0 4.54e-01 100.0% 75.4%
5053906 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.58 49.0 4.81e-01 100.0% 86.7%
4038410 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.58 49.0 3.64e-01 94.3% 92.1%
5050320 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.58 49.0 4.42e-01 100.0% 68.0%
4998113 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.58 43.0 4.51e-01 92.5% 97.8%
4971470 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.58 49.0 4.40e-01 100.0% 69.3%
4302391 4.1.1.398 beta barrels › SH3 › SH3 › SH3 › YolD 0.57 44.0 4.27e-01 94.3% 75.4%
4226849 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.57 47.0 4.26e-01 100.0% 65.0%
5043979 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 49.0 4.52e-01 100.0% 80.0%
4157193 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.56 48.0 4.48e-01 100.0% 74.3%
185635 4.1.1.391 beta barrels › SH3 › SH3 › SH3 › FDF, PF30873 0.56 45.0 3.63e-01 100.0% 43.0%
3220403 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 45.0 3.79e-01 100.0% 76.2%
3924377 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 44.0 4.39e-01 90.6% 87.3%
3578208 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 43.0 4.31e-01 92.5% 85.5%
5043132 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.55 45.0 4.02e-01 100.0% 67.1%
4554867 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.54 46.0 4.39e-01 100.0% 80.0%
4986651 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.54 44.0 3.98e-01 92.5% 82.7%
4387924 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.54 43.0 3.16e-01 98.1% 93.1%
4110878 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 41.0 4.35e-01 96.2% 100.0%
4961185 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.54 45.0 3.70e-01 98.1% 67.6%
3298989 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 42.0 3.40e-01 88.7% 62.7%
4158712 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.53 44.0 4.15e-01 100.0% 74.3%
3270324 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.53 42.0 4.29e-01 96.2% 94.0%
3818428 4.1.1.66 beta barrels › SH3 › SH3 › SH3 › LBR_tudor 0.53 44.0 3.96e-01 100.0% 68.0%
3372243 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 43.0 3.86e-01 100.0% 65.0%
145285 4.1.1.66 beta barrels › SH3 › SH3 › SH3 › LBR_tudor 0.52 41.0 3.88e-01 98.1% 72.7%
3824346 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 42.0 3.77e-01 100.0% 63.7%
3423337 4.1.1.141 beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.51 42.0 3.77e-01 100.0% 63.7%
3238405 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 39.0 3.93e-01 100.0% 89.1%
3419491 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 41.0 4.00e-01 98.1% 86.7%
3936468 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 40.0 3.45e-01 100.0% 51.0%
3450200 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 41.0 3.65e-01 100.0% 60.0%
3558188 4.1.1.101 beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.51 42.0 3.79e-01 100.0% 66.7%
1031172 4.1.1.113 beta barrels › SH3 › SH3 › SH3 › TraI_2B 0.51 43.0 3.99e-01 100.0% 73.6%
3584571 4.1.1.56 beta barrels › SH3 › SH3 › SH3 › RBB1NT 0.51 39.0 2.63e-01 98.1% 19.6%
3476178 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.50 42.0 3.35e-01 100.0% 85.0%
3533770 4.1.1.101 beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.50 38.0 3.20e-01 100.0% 45.7%