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IMGVR_UViG_2740891997_000001-2740891997-2741424535
Arc-VirIMGVR_UViG_2740891997_000001-2740891997-2741424535
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 120-318
Domain cluster:
rep: IMGVR_UViG_3300010237_000006-3300010237-Ga0136250_1000002017__D103-269
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5m1pB00 | 3.30.420.240 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.83 | 75.0 | 7.72e-01 | 100.0% | 97.9% |
| 8dkrB01 | 3.30.420.240 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.79 | 73.0 | 6.94e-01 | 96.0% | 100.0% |
| 4ifeA02 | 3.30.420.240 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.78 | 74.0 | 7.04e-01 | 99.5% | 99.6% |
| 1huxA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.74 | 43.0 | 5.48e-01 | 88.9% | 95.8% |
| 4dkwA00 | 3.30.420.280 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.73 | 63.0 | 6.42e-01 | 100.0% | 92.3% |
| 2ap1A01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.67 | 45.0 | 5.37e-01 | 88.9% | 98.6% |
| 2ch5A01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.66 | 46.0 | 5.33e-01 | 91.0% | 98.6% |
| 3psfA04 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.65 | 45.0 | 4.95e-01 | 88.9% | 84.8% |
| 3thxB02 | 3.30.420.110 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › MutS, connector domain | 0.64 | 40.0 | 4.54e-01 | 89.4% | 81.6% |
| 2ivnA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.63 | 43.0 | 4.66e-01 | 88.4% | 82.1% |
| 3nbmA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.61 | 32.0 | 4.27e-01 | 89.4% | 96.2% |
| 3mczA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.58 | 32.0 | 3.01e-01 | 91.0% | 43.1% |
| 5cz2C00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.58 | 34.0 | 3.81e-01 | 80.4% | 73.7% |
| 3venA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.57 | 36.0 | 4.30e-01 | 88.9% | 92.5% |
| 2x6nD00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.54 | 39.0 | 4.09e-01 | 73.9% | 99.4% |
| 5d84A02 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 28.0 | 3.54e-01 | 70.9% | 87.4% |
| 4kreA04 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.52 | 42.0 | 3.84e-01 | 84.9% | 84.0% |
| 1xa3A01 | 3.40.50.10540 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Crotonobetainyl-coa:carnitine coa-transferase; domain 1 | 0.51 | 37.0 | 3.22e-01 | 72.9% | 89.6% |
| 2l3tA02 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.51 | 25.0 | 3.29e-01 | 85.4% | 86.0% |
| 2w42B02 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.51 | 40.0 | 3.86e-01 | 81.9% | 90.0% |
| 8b0qA01 | 3.30.420.340 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › UvrC, RNAse H endonuclease domain | 0.51 | 39.0 | 4.14e-01 | 84.4% | 88.6% |
| 4lwoE01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 32.0 | 3.55e-01 | 91.0% | 76.2% |
ECOD (52)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5083931 | 2484.1.1.77 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C | 0.91 | 77.0 | 8.24e-01 | 98.5% | 98.3% |
| 5031041 | 2484.1.1.77 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C | 0.87 | 81.0 | 8.21e-01 | 100.0% | 96.4% |
| 5031052 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.83 | 81.0 | 8.05e-01 | 100.0% | 99.5% |
| 4988089 | 2484.1.1.77 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C | 0.82 | 76.0 | 7.82e-01 | 98.5% | 99.5% |
| 1949055 | 2484.1.1.77 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C | 0.82 | 72.0 | 7.43e-01 | 100.0% | 95.8% |
| 5041440 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.81 | 78.0 | 7.67e-01 | 100.0% | 99.0% |
| 3946809 | 2484.1.1.77 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C | 0.80 | 78.0 | 7.71e-01 | 100.0% | 97.6% |
| 5082827 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.80 | 76.0 | 7.47e-01 | 100.0% | 93.8% |
| 5081671 | 2484.1.1.76 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_3C | 0.79 | 67.0 | 7.10e-01 | 100.0% | 97.2% |
| 2877648 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.79 | 77.0 | 7.02e-01 | 100.0% | 95.6% |
| 3166064 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.78 | 74.0 | 7.16e-01 | 99.0% | 99.5% |
| 4995715 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.78 | 74.0 | 6.72e-01 | 99.5% | 97.3% |
| 4010072 | 2484.1.1.86 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TerL_nuclease | 0.77 | 73.0 | 6.83e-01 | 100.0% | 92.1% |
| 4031863 | 2484.1.1.86 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TerL_nuclease | 0.77 | 73.0 | 6.89e-01 | 99.5% | 93.0% |
| 4033330 | 2484.1.1.86 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TerL_nuclease | 0.75 | 72.0 | 7.00e-01 | 100.0% | 96.7% |
| 3947877 | 2484.1.1.86 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TerL_nuclease | 0.75 | 71.0 | 7.03e-01 | 99.5% | 99.0% |
| 3587035 | 2484.1.1.86 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TerL_nuclease | 0.74 | 70.0 | 6.93e-01 | 99.5% | 98.1% |
| 3590721 | 2484.1.1.86 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TerL_nuclease | 0.74 | 71.0 | 6.95e-01 | 100.0% | 98.1% |
| 2755869 | 2484.1.1.86 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TerL_nuclease | 0.74 | 70.0 | 6.78e-01 | 100.0% | 94.1% |
| 4524082 | 2484.1.1.76 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_3C | 0.74 | 63.0 | 6.51e-01 | 100.0% | 95.1% |
| 185684 | 2484.1.1.77 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C | 0.73 | 63.0 | 6.42e-01 | 100.0% | 92.3% |
| 3964959 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.73 | 64.0 | 6.61e-01 | 99.5% | 98.4% |
| 5008587 | 2484.1.1.330 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF460 | 0.72 | 44.0 | 3.82e-01 | 88.9% | 41.4% |
| 5055784 | 2484.1.1.330 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF460 | 0.71 | 41.0 | 4.62e-01 | 89.9% | 72.3% |
| 4957303 | 2484.1.1.330 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF460 | 0.71 | 44.0 | 3.46e-01 | 88.9% | 32.5% |
| 4965680 | 2484.1.1.330 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF460 | 0.71 | 40.0 | 4.55e-01 | 89.9% | 71.6% |
| 4446280 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.70 | 43.0 | 4.76e-01 | 89.9% | 74.4% |
| 4652181 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.68 | 45.0 | 4.96e-01 | 89.9% | 81.2% |
| 4476959 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.67 | 42.0 | 2.83e-01 | 90.5% | 17.0% |
| 3784502 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.63 | 45.0 | 4.55e-01 | 89.9% | 73.0% |
| 3939717 | 2484.1.1.72 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › YqgF | 0.62 | 46.0 | 4.70e-01 | 90.5% | 78.4% |
| 3243863 | 2484.1.1.72 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › YqgF | 0.62 | 45.0 | 4.56e-01 | 89.9% | 73.5% |
| 5024160 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.61 | 41.0 | 4.49e-01 | 88.4% | 81.2% |
| 3318932 | 2003.1.5.121 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DUF1442 | 0.61 | 31.0 | 3.77e-01 | 88.9% | 74.2% |
| 3294876 | 2484.1.1.106 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF659 | 0.59 | 42.0 | 4.28e-01 | 72.4% | 97.4% |
| 3952342 | 2484.1.1.139 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF429 | 0.58 | 49.0 | 4.61e-01 | 88.4% | 90.0% |
| 3958188 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.58 | 49.0 | 4.57e-01 | 88.4% | 88.2% |
| 5001446 | 2484.1.1.139 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF429 | 0.57 | 47.0 | 4.82e-01 | 89.4% | 88.9% |
| 4982982 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.57 | 46.0 | 4.68e-01 | 89.4% | 84.0% |
| 3741194 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.57 | 49.0 | 3.80e-01 | 89.9% | 96.1% |
| 4947743 | 2484.1.1.55 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH_dom | 0.57 | 40.0 | 4.30e-01 | 85.4% | 82.4% |
| 4934130 | 2484.1.1.139 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF429 | 0.56 | 47.0 | 4.78e-01 | 89.9% | 87.0% |
| 1266312 | 2003.1.5.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_2 | 0.55 | 31.0 | 2.88e-01 | 91.0% | 41.5% |
| 2161598 | 2484.1.1.62 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PRP8_domainIV | 0.54 | 41.0 | 3.68e-01 | 78.9% | 86.3% |
| 3956257 | 2484.1.1.9 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve | 0.53 | 39.0 | 3.95e-01 | 93.0% | 74.9% |
| 4931295 | 2007.1.14.5 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Peripla_BP_2 | 0.53 | 31.0 | 3.96e-01 | 77.9% | 100.0% |
| 3376135 | 2484.1.1.106 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF659 | 0.53 | 45.0 | 3.51e-01 | 90.5% | 98.8% |
| 3225154 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.53 | 28.0 | 3.34e-01 | 89.9% | 72.7% |
| 5073181 | 244.3.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU | 0.52 | 28.0 | 3.69e-01 | 89.9% | 91.2% |
| 3444325 | 2484.1.1.106 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF659 | 0.52 | 40.0 | 4.22e-01 | 80.4% | 97.8% |
| 3711964 | 2003.1.5.55 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PrmA | 0.52 | 32.0 | 3.40e-01 | 90.5% | 69.1% |
| 3430854 | 2484.1.1.106 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF659 | 0.51 | 43.0 | 3.42e-01 | 89.4% | 96.2% |