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IMGVR_UViG_2756170196_000002-2756170196-2756472989
Arc-VirIMGVR_UViG_2756170196_000002-2756170196-2756472989
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-158
Domain cluster:
rep: MT764210__UXF49854.1__7841G1D8-26__00026__D257-398
CATH (41)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6toaF01 | 3.30.2000.30 | Alpha Beta › 2-Layer Sandwich › STM4215-like › | 0.84 | 68.0 | 7.36e-01 | 99.3% | 96.9% |
| 2gjvA00 | 3.30.2000.10 | Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like | 0.80 | 64.0 | 6.74e-01 | 100.0% | 91.9% |
| 3fz2A00 | 3.30.70.1700 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phage minor tail protein U | 0.78 | 60.0 | 6.53e-01 | 99.3% | 95.3% |
| 1cg2A02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.71 | 40.0 | 4.64e-01 | 85.4% | 75.5% |
| 2y3uA02 | 3.30.980.50 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › | 0.70 | 45.0 | 5.07e-01 | 100.0% | 85.8% |
| 2nyiA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.69 | 35.0 | 4.31e-01 | 84.8% | 77.8% |
| 3pcoB06 | 3.30.70.380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain | 0.67 | 36.0 | 4.41e-01 | 95.4% | 81.9% |
| 4za1C00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.67 | 34.0 | 4.25e-01 | 90.1% | 79.3% |
| 4o38A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.65 | 36.0 | 4.45e-01 | 80.8% | 85.4% |
| 1b7yB06 | 3.30.70.380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain | 0.65 | 32.0 | 4.09e-01 | 74.2% | 81.4% |
| 4i6yA02 | 3.30.70.420 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain | 0.64 | 41.0 | 4.66e-01 | 92.7% | 86.4% |
| 2f7vA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 36.0 | 4.15e-01 | 92.1% | 77.8% |
| 3luyA03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.62 | 33.0 | 4.10e-01 | 89.4% | 84.3% |
| 2w59B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 36.0 | 4.04e-01 | 88.7% | 73.7% |
| 4dzdA02 | 3.30.70.1210 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 2 | 0.62 | 34.0 | 3.69e-01 | 84.8% | 63.4% |
| 2bkyX00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.61 | 35.0 | 4.50e-01 | 98.0% | 97.7% |
| 1sqeA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 34.0 | 4.04e-01 | 89.4% | 80.2% |
| 4n4rB00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.61 | 35.0 | 3.57e-01 | 98.7% | 56.3% |
| 3ahpA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 36.0 | 4.17e-01 | 92.7% | 83.0% |
| 6wubf01 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.60 | 35.0 | 4.28e-01 | 85.4% | 91.5% |
| 4y6iA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 35.0 | 4.13e-01 | 92.7% | 85.4% |
| 1vm0A00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.59 | 34.0 | 4.24e-01 | 98.7% | 92.5% |
| 1ekrA00 | 3.30.70.640 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Molybdopterin cofactor biosynthesis C (MoaC) domain | 0.58 | 41.0 | 4.24e-01 | 92.7% | 76.9% |
| 3lvtA03 | 2.60.40.2210 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.58 | 36.0 | 3.82e-01 | 96.7% | 70.5% |
| 1dpbA00 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.56 | 40.0 | 3.42e-01 | 74.8% | 77.0% |
| 8eisA01 | 2.70.170.10 | Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain | 0.55 | 40.0 | 3.66e-01 | 92.1% | 56.0% |
| 2l8yA00 | 3.30.110.70 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hypothetical protein apc22750. Chain B | 0.55 | 32.0 | 3.74e-01 | 95.4% | 81.0% |
| 3l60A01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.55 | 40.0 | 3.56e-01 | 76.8% | 77.3% |
| 3mcnA01 | 3.30.70.560 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK | 0.54 | 35.0 | 3.59e-01 | 96.7% | 66.0% |
| 5e4bA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.53 | 43.0 | 4.12e-01 | 85.4% | 88.1% |
| 3pcoB05 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.53 | 46.0 | 4.16e-01 | 96.0% | 93.8% |
| 4afhE00 | 2.70.170.10 | Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain | 0.52 | 48.0 | 4.27e-01 | 100.0% | 79.7% |
| 3mi6A01 | 2.70.98.60 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis | 0.52 | 47.0 | 3.73e-01 | 99.3% | 94.2% |
| 4c98A02 | 3.30.70.1900 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 36.0 | 3.75e-01 | 82.1% | 77.4% |
| 2xn1A01 | 2.70.98.60 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis | 0.52 | 47.0 | 3.70e-01 | 99.3% | 91.6% |
| 2w2sA00 | 3.10.460.20 | Alpha Beta › Roll › VSV matrix protein › Rhabdovirus matrix protein M2 | 0.51 | 34.0 | 3.39e-01 | 91.4% | 62.0% |
| 3jafA01 | 2.70.170.10 | Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain | 0.51 | 46.0 | 4.14e-01 | 99.3% | 81.5% |
| 6d6tA01 | 2.70.170.10 | Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain | 0.51 | 46.0 | 4.12e-01 | 99.3% | 80.0% |
| 6dw1A00 | 2.70.170.10 | Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain | 0.51 | 46.0 | 4.10e-01 | 99.3% | 81.0% |
| 1yc9A02 | 2.20.200.10 | Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.51 | 26.0 | 3.37e-01 | 100.0% | 88.0% |
| 6h05A00 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.50 | 37.0 | 3.23e-01 | 77.5% | 71.2% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5004177 | 304.124.1.3 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › DUF3168 | 0.88 | 69.0 | 7.60e-01 | 99.3% | 97.6% |
| 4928893 | 304.124.1.0 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like | 0.85 | 75.0 | 7.66e-01 | 100.0% | 95.2% |
| 3966645 | 304.124.1.0 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like | 0.82 | 63.0 | 6.91e-01 | 98.0% | 96.0% |
| 4034134 | 304.124.1.0 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like | 0.80 | 63.0 | 6.88e-01 | 98.0% | 97.6% |
| 5454 | 304.124.1.2 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Gp37 | 0.80 | 64.0 | 6.79e-01 | 100.0% | 93.3% |
| 5083880 | 304.124.1.0 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like | 0.77 | 67.0 | 6.90e-01 | 100.0% | 95.9% |
| 4954550 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.75 | 51.0 | 5.79e-01 | 98.7% | 91.3% |
| 3970985 | 304.124.1.9 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Phage_tail_terminator_9 | 0.74 | 63.0 | 6.57e-01 | 100.0% | 97.1% |
| 3972051 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.72 | 44.0 | 4.72e-01 | 92.1% | 70.0% |
| 5003262 | 304.124.1.10 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Pvc16_N | 0.71 | 67.0 | 6.46e-01 | 100.0% | 95.9% |
| 3965111 | 304.18.1.1 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB | 0.71 | 37.0 | 4.52e-01 | 81.5% | 77.9% |
| None | — | 0.71 | 43.0 | 5.18e-01 | 100.0% | 91.0% | |
| 3177367 | 330.1.1.4 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Rad52_Rad22 | 0.68 | 36.0 | 3.59e-01 | 95.4% | 49.7% |
| 4953567 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.68 | 33.0 | 4.33e-01 | 85.4% | 85.0% |
| 4136515 | 310.3.1.23 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › RP854 | 0.65 | 50.0 | 4.94e-01 | 100.0% | 76.2% |
| 3268575 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.64 | 37.0 | 4.24e-01 | 94.0% | 74.8% |
| 4395470 | 304.47.1.1 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA | 0.64 | 33.0 | 3.92e-01 | 83.4% | 71.2% |
| 4944050 | 304.25.1.0 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain | 0.64 | 37.0 | 4.23e-01 | 94.0% | 77.3% |
| 4940026 | 4081.1.1.17 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › DUF7345 | 0.63 | 43.0 | 4.15e-01 | 87.4% | 60.6% |
| 3552777 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.61 | 39.0 | 2.52e-01 | 81.5% | 14.1% |
| 3427288 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.61 | 36.0 | 3.98e-01 | 76.2% | 71.7% |
| 3523342 | 304.47.1.1 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA | 0.61 | 41.0 | 3.93e-01 | 90.1% | 57.8% |
| 3898132 | 304.5.1.3 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 | 0.59 | 36.0 | 3.71e-01 | 92.7% | 62.9% |
| 3602774 | 304.51.1.8 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas6b_C | 0.59 | 30.0 | 3.41e-01 | 82.8% | 62.6% |
| 1312442 | 12.1.1.43 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_38 | 0.58 | 37.0 | 4.11e-01 | 98.7% | 82.8% |
| 3423610 | 11.1.1.51 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 | 0.57 | 37.0 | 3.58e-01 | 78.1% | 57.6% |
| 3581757 | 11.12.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD,Neur_chan_memb | 0.56 | 43.0 | 3.76e-01 | 96.0% | 53.8% |
| 4170977 | 304.51.1.1 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cas6_C | 0.55 | 33.0 | 3.59e-01 | 85.4% | 69.6% |
| 3965192 | 1.1.13.67 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF2460 | 0.55 | 40.0 | 4.45e-01 | 94.7% | 99.1% |
| 3621533 | 11.12.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD | 0.54 | 49.0 | 4.32e-01 | 99.3% | 78.6% |
| 2471641 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.54 | 43.0 | 4.41e-01 | 98.7% | 85.9% |
| 3701983 | 304.153.1.0 ↗ | a+b two layers › Alpha-beta plaits › Collagenase G catalytic helper subdomain › Collagenase G catalytic helper subdomain | 0.54 | 49.0 | 4.67e-01 | 98.7% | 92.6% |
| 3705145 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.54 | 49.0 | 4.64e-01 | 100.0% | 91.1% |
| 3286575 | 222.1.1.4 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT | 0.53 | 34.0 | 3.65e-01 | 94.0% | 75.0% |
| 3353115 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.53 | 41.0 | 3.45e-01 | 82.1% | 59.2% |
| 3723425 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.53 | 41.0 | 3.19e-01 | 81.5% | 45.8% |
| 5013821 | 872.1.1.0 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like | 0.52 | 38.0 | 4.18e-01 | 80.8% | 94.2% |
| 4836885 | 11.12.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD | 0.52 | 47.0 | 4.26e-01 | 100.0% | 80.2% |
| 3213160 | 11.12.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like | 0.51 | 47.0 | 4.40e-01 | 100.0% | 84.9% |
| 3998755 | 11.12.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD,Neur_chan_memb | 0.51 | 46.0 | 3.68e-01 | 100.0% | 54.8% |
| 3924477 | 11.12.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD | 0.51 | 41.0 | 4.23e-01 | 88.1% | 90.3% |
| 2832216 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.50 | 43.0 | 4.37e-01 | 98.7% | 92.2% |
| 4978221 | 304.102.1.2 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruD | 0.50 | 43.0 | 3.83e-01 | 92.1% | 92.9% |