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IMGVR_UViG_2772190991_000001-2772190991-2773783124
Arc-VirIMGVR_UViG_2772190991_000001-2772190991-2773783124
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-56
Domain cluster:
rep: IMGVR_UViG_7000000171_000112-7000000171-SRS052697_LANL_scaffold_75554__gene_171384__D10-57
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1yfbA00 | 2.10.260.10 | Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › | 0.82 | 59.0 | 5.89e-01 | 100.0% | 75.0% |
| 1mvfD00 | 2.10.260.10 | Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › | 0.81 | 62.0 | 6.50e-01 | 100.0% | 95.5% |
| 3o27B00 | 2.10.260.10 | Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › | 0.76 | 57.0 | 5.58e-01 | 100.0% | 75.4% |
| 3iabB01 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.67 | 47.0 | 3.83e-01 | 76.0% | 79.8% |
| 4zg5A00 | 3.40.1210.10 | Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase | 0.62 | 42.0 | 2.67e-01 | 70.0% | 67.2% |
| 1ilvA00 | 3.40.1210.10 | Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase | 0.60 | 40.0 | 2.57e-01 | 70.0% | 67.3% |
| 6njyA01 | 3.30.70.1900 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 42.0 | 3.21e-01 | 76.0% | 49.6% |
| 5iu1B00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.58 | 40.0 | 3.14e-01 | 72.0% | 57.1% |
| 1dw9A02 | 3.30.1160.10 | Alpha Beta › 2-Layer Sandwich › Cyanate Lyase; Chain: A, domain 2 › Cyanate lyase, C-terminal domain | 0.55 | 45.0 | 4.18e-01 | 100.0% | 86.8% |
| 1mhmB00 | 3.30.360.50 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › S-adenosylmethionine decarboxylase | 0.55 | 34.0 | 3.40e-01 | 78.0% | 57.4% |
| 3q0bX00 | 2.30.280.10 | Mainly Beta › Roll › PUA domain-like › SRA-YDG | 0.54 | 45.0 | 3.37e-01 | 100.0% | 69.6% |
| 1ii2B01 | 3.40.449.10 | Alpha Beta › 3-Layer(aba) Sandwich › Phosphoenolpyruvate Carboxykinase; domain 1 › Phosphoenolpyruvate Carboxykinase, domain 1 | 0.54 | 37.0 | 2.60e-01 | 72.0% | 20.8% |
| 3ec8A00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.53 | 40.0 | 3.13e-01 | 92.0% | 80.6% |
| 1vhzA01 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.53 | 39.0 | 2.83e-01 | 100.0% | 25.3% |
| 5efrA01 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.52 | 45.0 | 3.91e-01 | 100.0% | 74.1% |
| 5ek8A01 | 2.60.40.3330 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 38.0 | 2.96e-01 | 82.0% | 56.3% |
| 2l33A00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.52 | 34.0 | 2.92e-01 | 70.0% | 44.0% |
| 7l1rG01 | 3.40.1380.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit | 0.51 | 38.0 | 2.54e-01 | 84.0% | 44.7% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4966971 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.89 | 67.0 | 6.52e-01 | 100.0% | 72.7% |
| 5031154 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.89 | 71.0 | 6.69e-01 | 100.0% | 71.7% |
| 5078891 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.89 | 80.0 | 7.74e-01 | 100.0% | 89.1% |
| 5032176 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.88 | 70.0 | 6.59e-01 | 100.0% | 71.7% |
| 4992409 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.87 | 68.0 | 7.17e-01 | 100.0% | 93.3% |
| 4967714 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.87 | 65.0 | 6.09e-01 | 100.0% | 66.7% |
| 4085449 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.87 | 67.0 | 5.83e-01 | 100.0% | 56.0% |
| 4930879 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.86 | 67.0 | 6.77e-01 | 100.0% | 86.0% |
| 5062781 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.85 | 67.0 | 7.05e-01 | 100.0% | 95.6% |
| 4944882 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.85 | 68.0 | 6.87e-01 | 100.0% | 86.0% |
| 5069260 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.85 | 67.0 | 6.76e-01 | 100.0% | 86.0% |
| 4942905 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.84 | 66.0 | 6.91e-01 | 100.0% | 97.8% |
| 4933873 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.82 | 64.0 | 6.23e-01 | 100.0% | 78.2% |
| 5031362 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.82 | 60.0 | 5.65e-01 | 100.0% | 65.0% |
| 4992635 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.82 | 64.0 | 6.54e-01 | 100.0% | 87.8% |
| 5050197 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.81 | 60.0 | 5.23e-01 | 100.0% | 53.3% |
| 5071954 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.81 | 60.0 | 5.64e-01 | 100.0% | 66.7% |
| 5032935 | 304.8.1.112 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › MazE_antitoxin | 0.80 | 61.0 | 4.41e-01 | 100.0% | 30.4% |
| 4958102 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.79 | 64.0 | 5.84e-01 | 100.0% | 67.7% |
| 5074387 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.77 | 62.0 | 6.10e-01 | 100.0% | 83.0% |
| 4954534 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.77 | 62.0 | 6.27e-01 | 100.0% | 92.0% |
| 5024735 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.75 | 58.0 | 5.80e-01 | 100.0% | 86.0% |
| 5031039 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.75 | 55.0 | 5.70e-01 | 100.0% | 88.9% |
| 3038102 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.72 | 60.0 | 5.89e-01 | 100.0% | 94.6% |
| 4967502 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.72 | 52.0 | 5.40e-01 | 100.0% | 86.7% |
| 3373308 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.68 | 54.0 | 5.07e-01 | 100.0% | 72.3% |
| 3743393 | 59.1.4.2 ↗ | beta complex topology › triple barrel › triple barrel › TFIID subunits TAF1-TAF7 › DUF3591 | 0.64 | 47.0 | 2.81e-01 | 82.0% | 18.1% |
| 3439924 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.64 | 48.0 | 4.82e-01 | 100.0% | 87.8% |
| 5028056 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.63 | 47.0 | 4.55e-01 | 100.0% | 71.7% |
| 5030312 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.62 | 50.0 | 4.94e-01 | 100.0% | 85.5% |
| 3994423 | 389.1.1.1 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF | 0.61 | 40.0 | 3.81e-01 | 82.0% | 55.0% |
| 4309637 | 1036.1.1.1 ↗ | a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 | 0.60 | 42.0 | 3.57e-01 | 76.0% | 45.2% |
| 3367574 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.59 | 40.0 | 2.70e-01 | 84.0% | 18.5% |
| 3597540 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.59 | 46.0 | 2.84e-01 | 92.0% | 28.3% |
| 5002475 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.58 | 39.0 | 2.43e-01 | 72.0% | 17.7% |
| 7696 | 812.2.1.1 ↗ | a+b duplicates or obligate multimers › MinE-like › Cyanase C-terminal domain › Cyanase C-terminal domain › Cyanate_lyase | 0.58 | 45.0 | 4.18e-01 | 94.0% | 90.0% |
| 3661948 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.58 | 48.0 | 4.35e-01 | 100.0% | 66.7% |
| 3830346 | 207.1.1.137 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_4, LRR_8 | 0.57 | 44.0 | 2.68e-01 | 90.0% | 44.4% |
| 3608304 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 39.0 | 3.08e-01 | 72.0% | 60.9% |
| 4262649 | 812.2.1.1 ↗ | a+b duplicates or obligate multimers › MinE-like › Cyanase C-terminal domain › Cyanase C-terminal domain › Cyanate_lyase | 0.56 | 43.0 | 3.88e-01 | 94.0% | 76.2% |
| 4243267 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.55 | 38.0 | 2.50e-01 | 76.0% | 16.4% |
| 4994063 | 832.1.1.1 ↗ | a+b three layers › N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 › N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 › N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 › eRF1_1 | 0.54 | 44.0 | 3.71e-01 | 98.0% | 65.3% |
| 2559786 | 3256.1.1.0 ↗ | a+b two layers › DUF2233 N-terminal domain › DUF2233 N-terminal domain › DUF2233 N-terminal domain | 0.54 | 35.0 | 3.59e-01 | 80.0% | 73.3% |
| 4879375 | 4032.1.1.0 ↗ | beta complex topology › barrel domains in phase 1 flagellin › barrel domains in phase 1 flagellin › barrel domains in phase 1 flagellin | 0.52 | 38.0 | 3.45e-01 | 84.0% | 58.9% |