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IMGVR_UViG_2778261324_000003-2778261324-2779705477
Arc-VirIMGVR_UViG_2778261324_000003-2778261324-2779705477
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 35-116
Domain cluster:
rep: IMGVR_UViG_3300013099_000017-3300013099-Ga0164315_1000000174__D6-85
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gscC00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.69 | 53.0 | 4.89e-01 | 85.4% | 80.9% |
| 4hehA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.68 | 43.0 | 4.36e-01 | 97.6% | 63.9% |
| 2zxqA06 | 1.20.1270.70 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle | 0.68 | 47.0 | 5.12e-01 | 72.0% | 93.9% |
| 6zhiB02 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.67 | 47.0 | 4.77e-01 | 74.4% | 88.0% |
| 1i5nB00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.66 | 53.0 | 4.68e-01 | 89.0% | 75.0% |
| 3a98A02 | 1.20.1270.350 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Dedicator of cytokinesis N-terminal subdomain | 0.66 | 53.0 | 5.22e-01 | 86.6% | 100.0% |
| 2n3eA01 | 1.10.274.70 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain | 0.61 | 46.0 | 4.22e-01 | 82.9% | 70.4% |
| 3c18A02 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.61 | 51.0 | 4.56e-01 | 93.9% | 92.4% |
| 1yxrA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.60 | 39.0 | 4.06e-01 | 74.4% | 73.0% |
| 1ug7A00 | 1.20.120.360 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Axin interactor, dorsalization-associated protein, N-terminal domain | 0.60 | 48.0 | 4.14e-01 | 86.6% | 76.6% |
| 4o6kA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.59 | 41.0 | 3.49e-01 | 70.7% | 71.3% |
| 2hsbA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.59 | 48.0 | 4.27e-01 | 93.9% | 98.4% |
| 7cjsB01 | 1.20.1080.10 | Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. | 0.58 | 43.0 | 3.20e-01 | 78.0% | 82.2% |
| 3k9iA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.56 | 39.0 | 3.66e-01 | 73.2% | 63.1% |
| 6xssA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.55 | 43.0 | 4.60e-01 | 93.9% | 98.6% |
| 6wshA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 32.0 | 3.71e-01 | 96.3% | 83.6% |
| 1s8nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 32.0 | 3.69e-01 | 96.3% | 81.0% |
| 7tj4A01 | 1.25.40.1040 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.55 | 45.0 | 3.96e-01 | 97.6% | 60.8% |
| 2vpnA00 | 3.40.190.170 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Bacterial extracellular solute-binding protein, family 7 | 0.54 | 46.0 | 3.19e-01 | 98.8% | 79.1% |
| 4ex8A00 | 3.40.1790.10 | Alpha Beta › 3-Layer(aba) Sandwich › Indigoidine synthase fold › Indigoidine synthase domain | 0.53 | 42.0 | 2.94e-01 | 89.0% | 54.8% |
| 2k3oA00 | 1.10.274.60 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain | 0.52 | 44.0 | 3.80e-01 | 93.9% | 75.2% |
| 7dfeA01 | 1.10.274.60 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain | 0.51 | 40.0 | 3.53e-01 | 87.8% | 74.8% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4095048 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.79 | 57.0 | 4.94e-01 | 74.4% | 68.3% |
| 3713784 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.72 | 57.0 | 5.68e-01 | 85.4% | 92.9% |
| 3997093 | 133.1.1.1 ↗ | alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF | 0.71 | 49.0 | 3.61e-01 | 70.7% | 87.1% |
| 3782769 | 3352.1.1.4 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › Alg6_Alg8 | 0.65 | 53.0 | 3.23e-01 | 87.8% | 70.9% |
| 3702788 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.64 | 51.0 | 4.23e-01 | 89.0% | 60.6% |
| 3970091 | 3883.1.1.0 ↗ | alpha bundles › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain | 0.63 | 52.0 | 3.79e-01 | 90.2% | 44.0% |
| 3818962 | 192.29.1.114 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Mitofilin | 0.58 | 45.0 | 3.83e-01 | 86.6% | 96.0% |
| 4934584 | 3352.1.1.0 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain | 0.58 | 41.0 | 2.90e-01 | 74.4% | 26.5% |
| 3493629 | 109.4.1.1200 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_WDR35 | 0.58 | 46.0 | 4.05e-01 | 86.6% | 78.4% |
| 2394140 | 1203.1.2.1 ↗ | alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 › ASD2 | 0.58 | 48.0 | 3.78e-01 | 90.2% | 65.7% |
| 3378097 | 604.1.1.110 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › WIT1_2_N | 0.57 | 42.0 | 3.63e-01 | 75.6% | 87.5% |
| 4514051 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.57 | 41.0 | 3.72e-01 | 76.8% | 99.1% |
| 5058267 | 3352.1.1.0 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain | 0.57 | 46.0 | 3.01e-01 | 91.5% | 19.5% |
| 4248772 | 140.1.1.5 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon_1 | 0.57 | 51.0 | 3.93e-01 | 100.0% | 79.5% |
| 1790834 | 3086.1.1.1 ↗ | alpha bundles › Diacylglycerol kinase (DAGK) › Diacylglycerol kinase (DAGK) › Diacylglycerol kinase (DAGK) › DAGK_prokar | 0.57 | 44.0 | 4.40e-01 | 82.9% | 97.6% |
| 4025218 | 3352.1.1.9 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › Mannosyl_trans | 0.56 | 42.0 | 2.76e-01 | 79.3% | 42.5% |
| 4370184 | 3758.2.1.1 ↗ | alpha bundles › Bacterial hemolysins-like › Biopolymer transport protein ExbB › Biopolymer transport protein ExbB › MotA_ExbB | 0.55 | 48.0 | 3.76e-01 | 100.0% | 74.5% |
| 5056227 | 310.2.1.33 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › V_ATPase_I | 0.54 | 45.0 | 3.24e-01 | 90.2% | 59.1% |
| 3966676 | 109.32.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Alkylsulfatase SdsA1 linker domain › Alkylsulfatase SdsA1 linker domain | 0.54 | 41.0 | 3.85e-01 | 81.7% | 70.0% |
| 3481355 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 41.0 | 2.75e-01 | 85.4% | 22.4% |
| 3784611 | 109.4.1.1390 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF31234 | 0.51 | 42.0 | 3.96e-01 | 100.0% | 73.3% |
| 3447876 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.51 | 43.0 | 3.13e-01 | 98.8% | 33.0% |