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IMGVR_UViG_2785510778_000006-2785510778-2785847881

Arc-Vir

IMGVR_UViG_2785510778_000006-2785510778-2785847881

Identity

Kingdom:
archaea

Quality

73.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-66
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1x2nA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.88 60.0 5.70e-01 71.2% 61.7%
1qo0D02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 53.0 5.61e-01 86.5% 80.4%
2z99A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 56.0 4.60e-01 82.7% 47.1%
1wy5A01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.72 59.0 3.87e-01 90.4% 60.8%
3cuqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 49.0 4.19e-01 71.2% 95.1%
3r31A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.71 48.0 3.11e-01 71.2% 15.0%
1o57A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 54.0 4.81e-01 88.5% 58.3%
4p9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 47.0 4.31e-01 84.6% 55.2%
1t6sA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 52.0 4.38e-01 100.0% 50.0%
2ebbA00 3.30.1360.20 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase 0.68 48.0 3.92e-01 92.3% 40.6%
2is6A04 1.10.486.10 Mainly Alpha › Orthogonal Bundle › PCRA; domain 4 › PCRA; domain 4 0.67 52.0 3.63e-01 94.2% 27.3%
2h09A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 49.0 4.42e-01 78.8% 90.1%
4i98C01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 53.0 4.61e-01 84.6% 58.7%
1dcoA00 3.30.1360.20 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase 0.66 46.0 3.70e-01 90.4% 38.4%
6juvB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 52.0 4.57e-01 86.5% 60.0%
3bjoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 46.0 3.71e-01 76.9% 94.2%
7bqiA01 1.20.58.900 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RUN domain 0.64 46.0 3.36e-01 78.8% 70.2%
3e0jB00 3.90.1030.20 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain 0.64 52.0 3.78e-01 90.4% 56.6%
5o5cB02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.64 52.0 3.87e-01 88.5% 79.7%
1tbxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 48.0 3.96e-01 88.5% 47.8%
2pokA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.62 46.0 2.89e-01 80.8% 60.1%
3aeiA00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.62 42.0 3.39e-01 71.2% 80.9%
3ofgB00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.61 51.0 4.32e-01 96.2% 55.2%
4gyiA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.61 51.0 4.13e-01 92.3% 79.6%
1tfeA02 1.10.286.20 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › 0.61 43.0 4.59e-01 82.7% 86.7%
2wpvE00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.61 52.0 3.32e-01 98.1% 36.8%
1in0A01 3.30.70.860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 40.0 3.66e-01 96.2% 50.0%
4uwmA00 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.60 52.0 3.16e-01 98.1% 17.1%
1lucA00 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.60 51.0 3.17e-01 98.1% 44.5%
2c1iA02 3.90.640.30 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › 0.59 34.0 3.08e-01 90.4% 36.4%
2rb7A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.59 48.0 3.04e-01 88.5% 25.7%
2d4zA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.58 45.0 3.15e-01 82.7% 36.7%
2yxoB00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.58 48.0 3.08e-01 92.3% 24.5%
1usmA00 3.30.1360.20 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase 0.57 48.0 4.21e-01 94.2% 64.9%
3sqnB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 39.0 3.81e-01 100.0% 65.6%
3lmmA03 3.30.565.60 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › 0.56 46.0 3.35e-01 100.0% 63.2%
7bipB01 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.56 48.0 2.99e-01 98.1% 19.6%
2b81C00 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.56 46.0 2.95e-01 98.1% 47.3%
6l2cB00 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.56 47.0 2.83e-01 96.2% 62.7%
4bgpA01 1.20.142.20 Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › 0.54 45.0 3.47e-01 96.2% 48.8%
5mmjh01 3.30.1370.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.54 43.0 3.85e-01 88.5% 81.3%
1khvA04 6.10.140.320 Special › Helix non-globular › Helix Hairpins › 0.54 37.0 3.70e-01 84.6% 70.4%
6liuC02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 48.0 3.69e-01 100.0% 50.9%
4uhiA01 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.52 42.0 2.57e-01 100.0% 75.0%
1lfwA03 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 44.0 3.70e-01 94.2% 64.8%
4hziB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 44.0 2.88e-01 98.1% 39.6%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4048893 101.17.1.1 alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.79 55.0 5.00e-01 73.1% 55.7%
3591004 3355.1.1.8 alpha complex topology › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › Na_H_antiporter 0.77 62.0 3.60e-01 88.5% 68.4%
5055797 177.1.1.0 alpha bundles › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease 0.74 49.0 3.32e-01 71.2% 18.9%
4603329 101.1.2.108 alpha arrays › HTH › HTH › winged helix domain › PuR_N 0.73 54.0 4.64e-01 84.6% 51.2%
3588857 101.1.2.93 alpha arrays › HTH › HTH › winged helix domain › HTH_Mga 0.71 49.0 4.13e-01 84.6% 44.7%
3560047 2006.1.4.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.69 47.0 4.36e-01 71.2% 83.1%
5058130 304.120.1.6 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer 0.68 54.0 4.79e-01 90.4% 60.0%
5041715 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.67 48.0 3.65e-01 73.1% 72.7%
3341083 109.4.1.728 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.67 59.0 3.59e-01 98.1% 23.1%
3349197 109.4.1.192 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 0.67 58.0 3.76e-01 98.1% 31.2%
3811338 109.4.1.2260 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_6, TPR_19 0.67 59.0 3.64e-01 98.1% 25.9%
4053319 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.67 54.0 4.51e-01 86.5% 52.9%
3850744 263.1.1.0 a+b three layers › SRF-like › SRF-like › SRF-like 0.66 48.0 4.42e-01 78.8% 64.3%
3644852 216.1.1.1 a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.66 48.0 3.17e-01 76.9% 62.4%
4796697 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.66 52.0 4.45e-01 84.6% 55.6%
None 0.65 56.0 3.48e-01 96.2% 56.7%
5041064 305.2.1.1 a+b two layers › DCoH-like › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin_4a 0.65 47.0 3.85e-01 92.3% 42.1%
4941846 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.65 52.0 4.53e-01 86.5% 58.7%
1192871 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.65 47.0 5.09e-01 78.8% 97.7%
4156356 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.64 53.0 4.36e-01 86.5% 50.0%
3614763 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.64 45.0 3.38e-01 73.1% 50.8%
5060625 2004.1.1.14 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU 0.64 55.0 3.60e-01 94.2% 85.6%
5001157 304.120.1.6 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer 0.64 55.0 4.70e-01 98.1% 58.8%
4940513 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.64 50.0 4.17e-01 86.5% 48.9%
3739970 109.4.1.64 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › GET4 0.64 48.0 3.10e-01 84.6% 35.9%
5057781 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.64 50.0 4.32e-01 84.6% 55.0%
5026583 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.62 51.0 4.50e-01 86.5% 60.0%
3356447 207.1.1.258 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › WH_DRP 0.62 48.0 2.95e-01 100.0% 14.0%
4600303 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.62 49.0 4.37e-01 86.5% 60.0%
3586018 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.62 44.0 3.20e-01 75.0% 37.9%
4215095 604.39.1.0 alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters 0.61 49.0 3.07e-01 96.2% 22.9%
3996360 109.2.1.5 alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Trehalase 0.61 48.0 2.90e-01 84.6% 23.2%
3581366 74.1.1.0 beta duplicates or obligate multimers › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain 0.61 41.0 2.43e-01 71.2% 83.2%
3168940 109.4.1.64 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › GET4 0.61 50.0 3.18e-01 98.1% 26.8%
3776113 219.1.1.16 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C48 0.61 49.0 3.09e-01 88.5% 18.8%
4616680 7577.1.1.2 a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_3 0.60 52.0 3.13e-01 98.1% 83.5%
5035964 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.59 51.0 3.23e-01 100.0% 51.7%
3870867 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.59 47.0 3.64e-01 88.5% 60.8%
5071736 2004.1.1.277 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › HerA_C 0.59 50.0 3.00e-01 98.1% 14.2%
5053635 2002.1.1.102 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP 0.59 47.0 3.10e-01 98.1% 24.9%
3263789 310.1.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain 0.58 49.0 4.00e-01 100.0% 70.9%
3244401 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.58 49.0 3.77e-01 92.3% 77.4%
3240388 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.57 48.0 2.96e-01 92.3% 76.9%
5065439 2004.1.1.97 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.57 46.0 3.20e-01 86.5% 58.2%
4990978 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.57 39.0 2.92e-01 75.0% 28.5%
3381254 109.4.1.2593 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_long, Eplus_motif 0.56 46.0 2.81e-01 88.5% 22.4%
3252212 283.2.1.0 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like 0.56 48.0 4.26e-01 98.1% 78.7%
4968322 304.126.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C 0.55 34.0 3.43e-01 92.3% 60.0%
4988104 3070.1.1.0 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins 0.54 46.0 3.89e-01 98.1% 76.7%
4392601 304.36.1.1 a+b two layers › Alpha-beta plaits › YajQ-like › YajQ-like › DUF520 0.54 39.0 3.54e-01 92.3% 56.2%
5078195 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 40.0 3.71e-01 100.0% 65.3%