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IMGVR_UViG_2786546169_000001-2786546169-2786838174

Arc-Vir

IMGVR_UViG_2786546169_000001-2786546169-2786838174

Identity

Kingdom:
archaea

Quality

81.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-61_187-334
PDB
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2auaA01 3.20.170.10 Alpha Beta › Alpha-Beta Barrel › ADP-ribosylation fold › ADP-ribosylation domain 0.59 30.0 3.98e-01 77.9% 89.8%
1dx5M02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 25.0 3.09e-01 86.3% 73.1%
1t11A03 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.51 21.0 2.90e-01 99.0% 74.2%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5017018 237.1.1.41 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › FRG 0.67 57.0 5.11e-01 87.3% 92.5%
3193504 237.1.1.0 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation 0.59 40.0 4.75e-01 84.3% 100.0%
3284535 295.1.1.13 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF3090 0.55 33.0 4.19e-01 99.5% 100.0%
2495192 237.1.1.11 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › RES 0.51 38.0 4.23e-01 84.8% 97.5%
3037983 3016.1.1.3 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_5 0.50 24.0 3.03e-01 88.7% 73.7%
D2 high residues 369-493
PDB
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2dp9A01 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.84 65.0 7.17e-01 80.8% 100.0%
1t62B00 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.81 63.0 5.69e-01 80.8% 84.0%
2kkuA00 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.78 72.0 6.98e-01 99.2% 97.8%
1xneA00 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.74 54.0 5.71e-01 76.0% 96.5%
1i2dA02 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.69 52.0 4.49e-01 78.4% 72.3%
1v47A01 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.69 52.0 5.16e-01 79.2% 98.5%
8a8gA01 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.68 50.0 4.84e-01 76.0% 91.4%
2gksB01 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.68 51.0 4.94e-01 78.4% 94.3%
4rcmB00 3.10.590.10 Alpha Beta › Roll › ph1033 like fold › ph1033 like domains 0.67 63.0 5.74e-01 100.0% 83.6%
1x6vA02 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.67 51.0 4.69e-01 78.4% 84.8%
1jhdA02 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.66 50.0 4.31e-01 79.2% 71.0%
2aq6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 48.0 4.66e-01 79.2% 83.9%
3dnhA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 46.0 4.39e-01 79.2% 74.2%
3ba3B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 44.0 4.24e-01 78.4% 76.9%
5bncB01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 44.0 4.16e-01 80.0% 75.2%
5jv4A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 43.0 4.14e-01 79.2% 85.9%
1flmA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 43.0 4.35e-01 79.2% 83.6%
2furB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 42.0 3.73e-01 79.2% 67.4%
2q9kA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 40.0 3.80e-01 80.8% 61.9%
1vl7A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 47.0 4.64e-01 97.6% 88.9%
7rd0A01 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.50 37.0 3.51e-01 77.6% 99.4%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4229723 1.1.9.7 beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF365 0.92 81.0 7.51e-01 91.2% 81.3%
4122172 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.91 81.0 8.15e-01 92.0% 99.2%
4940231 1.1.9.9 beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.90 86.0 8.45e-01 100.0% 97.7%
5016521 1.1.9.7 beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF365 0.89 85.0 8.29e-01 100.0% 99.3%
4995643 1.1.9.9 beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.88 84.0 7.93e-01 100.0% 97.2%
5079450 1.1.9.9 beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.88 84.0 8.02e-01 100.0% 96.4%
4950776 1.1.9.7 beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF365 0.85 74.0 7.10e-01 91.2% 97.9%
5014837 1.1.9.9 beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.85 80.0 7.05e-01 100.0% 96.0%
2105336 1.1.9.9 beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.85 80.0 7.50e-01 100.0% 91.3%
4970789 1.1.9.7 beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF365 0.83 78.0 7.48e-01 100.0% 97.1%
5032181 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.83 77.0 7.40e-01 99.2% 98.6%
5073325 1.1.9.7 beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF365 0.82 76.0 7.32e-01 99.2% 97.1%
4972120 1.1.9.35 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF30643 0.81 62.0 6.60e-01 79.2% 100.0%
5042221 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.81 60.0 6.44e-01 76.0% 100.0%
5077279 1.1.9.35 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF30643 0.81 61.0 6.27e-01 78.4% 89.2%
5023730 1.1.9.9 beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.81 73.0 6.94e-01 96.8% 100.0%
5081834 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.81 75.0 7.32e-01 99.2% 100.0%
4982523 1.1.9.35 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF30643 0.80 62.0 6.49e-01 80.8% 100.0%
178 1.1.9.9 beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.80 68.0 6.95e-01 90.4% 93.3%
4940359 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.80 74.0 6.50e-01 100.0% 88.3%
5024536 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.79 73.0 6.91e-01 99.2% 98.6%
3944719 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.79 61.0 5.88e-01 80.8% 92.1%
3653680 1.1.9.9 beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.78 60.0 5.12e-01 79.2% 61.1%
4957730 1.1.9.3 beta barrels › cradle loop barrel › RIFT-related › PUA domain › EVE 0.78 73.0 7.01e-01 100.0% 94.3%
5035541 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.78 57.0 6.43e-01 75.2% 98.9%
5006048 1.1.9.9 beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.77 64.0 6.81e-01 95.2% 99.1%
4990496 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.77 67.0 6.96e-01 96.8% 100.0%
4960614 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.76 60.0 6.35e-01 81.6% 100.0%
5016524 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.75 70.0 6.65e-01 100.0% 92.4%
4954659 1.1.9.22 beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF1802 0.74 68.0 6.18e-01 99.2% 89.1%
3199787 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.73 68.0 6.66e-01 100.0% 97.0%
4498250 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.73 61.0 6.42e-01 96.8% 100.0%
5022429 1.1.9.35 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF30643 0.72 64.0 6.45e-01 97.6% 95.2%
4932847 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.71 66.0 6.63e-01 100.0% 98.4%
4999514 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.71 64.0 6.04e-01 97.6% 99.3%
3387963 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.70 53.0 5.33e-01 78.4% 100.0%
4178357 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.70 37.0 4.85e-01 76.0% 98.5%
5030320 1.1.9.9 beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.70 64.0 6.43e-01 99.2% 98.4%
4174313 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.70 34.0 4.53e-01 74.4% 93.3%
3942604 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.69 60.0 6.01e-01 92.8% 96.0%
172 1.1.9.16 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_2 0.69 52.0 5.18e-01 79.2% 99.2%
3629618 1.1.9.16 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_2 0.69 52.0 4.50e-01 79.2% 85.8%
5053092 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.68 63.0 5.67e-01 100.0% 98.2%
4121844 1.1.9.16 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_2 0.68 52.0 4.58e-01 78.4% 75.4%
4132740 1.1.9.16 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_2 0.68 52.0 4.71e-01 79.2% 81.8%
4589682 1.1.9.16 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_2 0.68 52.0 4.77e-01 79.2% 86.3%
4946513 1.1.9.55 beta barrels › cradle loop barrel › RIFT-related › PUA domain › ATP-sulfurylase 0.68 52.0 4.78e-01 79.2% 83.1%
5079294 1.1.9.16 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_2 0.68 52.0 4.76e-01 79.2% 84.4%
4959440 1.1.9.16 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_2 0.68 52.0 4.66e-01 79.2% 84.1%
3418029 1.1.9.16 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_2 0.68 51.0 4.55e-01 78.4% 80.0%
4104106 1.1.9.16 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_2 0.68 51.0 4.54e-01 78.4% 81.7%
4089484 1.1.9.16 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_2 0.67 51.0 4.70e-01 79.2% 81.9%
4354776 1.1.9.16 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_2 0.67 51.0 4.42e-01 79.2% 84.3%
4057360 1.1.9.16 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_2 0.66 50.0 4.60e-01 78.4% 83.1%
3494415 1.1.9.16 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_2 0.66 50.0 4.28e-01 79.2% 69.5%
4967879 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.64 46.0 5.25e-01 76.0% 98.9%
3972039 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.62 58.0 5.70e-01 100.0% 97.8%
5035069 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.61 47.0 4.41e-01 80.8% 76.7%
3290373 1.1.5.31 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.61 46.0 4.45e-01 79.2% 81.3%
3286515 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.60 45.0 4.41e-01 79.2% 82.1%
4902667 1.1.5.18 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › FMN_bind_2 0.58 43.0 3.83e-01 79.2% 74.3%
4050881 304.60.1.2 a+b two layers › Alpha-beta plaits › Ribosomal protein L10-like › Ribosomal protein L10-like › Ribosomal_L10 0.56 38.0 3.11e-01 80.8% 37.0%
5028515 304.60.1.2 a+b two layers › Alpha-beta plaits › Ribosomal protein L10-like › Ribosomal protein L10-like › Ribosomal_L10 0.56 37.0 3.33e-01 80.0% 47.2%
5051960 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 47.0 4.41e-01 96.0% 85.8%
4959966 304.60.1.2 a+b two layers › Alpha-beta plaits › Ribosomal protein L10-like › Ribosomal protein L10-like › Ribosomal_L10 0.53 35.0 3.01e-01 77.6% 42.1%
4927452 304.60.1.2 a+b two layers › Alpha-beta plaits › Ribosomal protein L10-like › Ribosomal protein L10-like › Ribosomal_L10 0.53 36.0 3.07e-01 81.6% 42.0%
3701864 70.3.1.0 beta barrels › beta-clip › SET domain-like › SET domain-like 0.51 43.0 3.38e-01 96.0% 97.6%
D3 medium residues 63-157
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5lnkA00 1.20.58.1610 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 0.60 30.0 2.80e-01 76.8% 39.1%
4qs8A01 3.40.367.20 Alpha Beta › 3-Layer(aba) Sandwich › Hexokinase; domain 1 › 0.58 45.0 3.20e-01 83.2% 48.6%
5jqkA03 3.90.230.10 Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily 0.54 39.0 2.83e-01 77.9% 57.0%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.53 38.0 3.19e-01 75.8% 92.8%
3thxB04 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.52 37.0 3.39e-01 73.7% 61.7%
3zzoA00 3.30.70.2800 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 37.0 3.77e-01 74.7% 100.0%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3957227 2011.2.1.7 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PAC2 0.52 37.0 2.82e-01 75.8% 84.3%
3638162 101.1.2.455 alpha arrays › HTH › HTH › winged helix domain › HTH_CDT1 0.51 41.0 3.41e-01 86.3% 80.0%
4124135 601.23.1.4 alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.51 36.0 2.62e-01 75.8% 29.0%