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IMGVR_UViG_2788499920_000001-2788499920-2788989453
Arc-VirIMGVR_UViG_2788499920_000001-2788499920-2788989453
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-67
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5oomK00 | 3.90.1180.10 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L13p; Chain: A; › Ribosomal protein L13 | 0.59 | 44.0 | 3.22e-01 | 81.0% | 61.6% |
| 1vw4H00 | 3.90.1180.10 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L13p; Chain: A; › Ribosomal protein L13 | 0.59 | 44.0 | 3.42e-01 | 82.5% | 77.0% |
| 4iimA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.58 | 45.0 | 4.75e-01 | 100.0% | 94.7% |
| 4uy8X00 | 2.30.170.40 | Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L28/L24 | 0.57 | 33.0 | 3.13e-01 | 95.2% | 42.9% |
| 2dmoA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.56 | 45.0 | 4.40e-01 | 100.0% | 80.9% |
| 1x6bA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.56 | 44.0 | 4.47e-01 | 100.0% | 87.5% |
| 3t2lA02 | 2.60.40.2630 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 42.0 | 3.42e-01 | 95.2% | 87.0% |
| 2vknA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.53 | 44.0 | 4.35e-01 | 100.0% | 86.4% |
| 1lckA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.53 | 42.0 | 4.38e-01 | 100.0% | 94.9% |
| 6uzjA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.52 | 42.0 | 4.22e-01 | 100.0% | 90.5% |
| 3p8bB02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 39.0 | 3.94e-01 | 100.0% | 80.6% |
| 2kxcA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.52 | 43.0 | 4.27e-01 | 100.0% | 88.1% |
| 1mkfA02 | 2.60.40.1340 | Mainly Beta › Sandwich › Immunoglobulin-like › Chemokine-binding protein M3-like | 0.52 | 38.0 | 2.91e-01 | 82.5% | 93.0% |
| 5bpxA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.51 | 40.0 | 3.13e-01 | 90.5% | 63.4% |
| 3j7aF03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.50 | 37.0 | 3.60e-01 | 100.0% | 70.4% |
| 1krhA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.50 | 30.0 | 2.71e-01 | 76.2% | 38.1% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4944185 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.77 | 53.0 | 5.32e-01 | 100.0% | 70.8% |
| 3595897 | 3529.1.1.0 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain | 0.76 | 48.0 | 5.10e-01 | 100.0% | 74.5% |
| 3593781 | 3529.1.1.0 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain | 0.72 | 49.0 | 5.23e-01 | 100.0% | 81.8% |
| 4269273 | 4076.4.1.1 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain › PriS_C | 0.71 | 49.0 | 5.48e-01 | 98.4% | 100.0% |
| 3302941 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.66 | 34.0 | 2.37e-01 | 100.0% | 14.6% |
| 4649270 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.59 | 43.0 | 4.18e-01 | 100.0% | 70.0% |
| 3242822 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.57 | 39.0 | 2.49e-01 | 73.0% | 73.2% |
| 3926701 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.56 | 44.0 | 4.38e-01 | 100.0% | 82.4% |
| 4335022 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 45.0 | 4.06e-01 | 100.0% | 70.5% |
| 3869065 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.53 | 46.0 | 3.98e-01 | 100.0% | 67.0% |
| 3931418 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 41.0 | 4.26e-01 | 100.0% | 91.7% |
D2
high
residues 74-123
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1y6xA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.80 | 58.0 | 4.79e-01 | 78.0% | 62.1% |
| 2x0cA01 | 1.20.1420.10 | Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain | 0.75 | 52.0 | 3.54e-01 | 74.0% | 35.4% |
| 2jqtA00 | 1.20.1280.40 | Mainly Alpha › Up-down Bundle › Monooxygenase › HHA | 0.70 | 54.0 | 5.23e-01 | 90.0% | 77.2% |
| 2p0vA01 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.70 | 60.0 | 3.55e-01 | 100.0% | 40.3% |
| 2wvxA04 | 1.20.1610.10 | Mainly Alpha › Up-down Bundle › Glycosyl hydrolase family fold › alpha-1,2-mannosidases domains | 0.69 | 49.0 | 3.42e-01 | 78.0% | 32.4% |
| 1dd3A01 | 1.20.5.710 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Single helix bin | 0.67 | 53.0 | 5.13e-01 | 92.0% | 84.2% |
| 3u8vA00 | 1.20.120.660 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain | 0.65 | 58.0 | 4.89e-01 | 100.0% | 65.1% |
| 2mmbA00 | 4.10.640.20 | Few Secondary Structures › Irregular › 30s Ribosomal Protein S18 › | 0.64 | 55.0 | 4.38e-01 | 100.0% | 80.4% |
| 2o36A01 | 1.20.1050.40 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › Endopeptidase. Chain P; domain 1 | 0.64 | 53.0 | 4.07e-01 | 100.0% | 65.6% |
| 1lkoA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.63 | 54.0 | 3.96e-01 | 100.0% | 84.1% |
| 2pvqA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.63 | 51.0 | 4.07e-01 | 94.0% | 68.9% |
| 5ffdA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.61 | 53.0 | 3.89e-01 | 100.0% | 87.6% |
| 3bjdA01 | 1.10.1240.20 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Lytic transglycosylase, superhelical linker domain | 0.60 | 49.0 | 4.29e-01 | 100.0% | 87.5% |
| 4a17U01 | 1.10.287.310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.60 | 46.0 | 4.20e-01 | 94.0% | 84.4% |
| 1bucA01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.60 | 48.0 | 3.84e-01 | 100.0% | 73.2% |
| 3t69A02 | 3.30.420.310 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, C-terminal domain | 0.60 | 45.0 | 3.08e-01 | 90.0% | 21.7% |
| 3fseB02 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.60 | 48.0 | 3.64e-01 | 96.0% | 86.8% |
| 2rbdA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.60 | 53.0 | 3.78e-01 | 100.0% | 84.0% |
| 3bgeA01 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.59 | 46.0 | 3.91e-01 | 94.0% | 77.1% |
| 2qf9A01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.59 | 48.0 | 3.54e-01 | 100.0% | 88.5% |
| 2e9xA01 | 1.20.58.1030 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 46.0 | 3.60e-01 | 96.0% | 65.6% |
| 2kvsA00 | 1.10.150.260 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › YozE SAM-like | 0.54 | 46.0 | 3.97e-01 | 98.0% | 76.2% |
| 4e12A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 44.0 | 3.05e-01 | 100.0% | 66.3% |
| 1vq8V00 | 1.10.287.310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.53 | 39.0 | 3.72e-01 | 88.0% | 92.3% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3284374 | 109.3.1.156 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › DUF8129 | 0.83 | 74.0 | 6.97e-01 | 100.0% | 83.3% |
| 3590608 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.81 | 72.0 | 4.43e-01 | 100.0% | 23.3% |
| 4033427 | 639.2.1.0 ↗ | alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) | 0.77 | 61.0 | 5.39e-01 | 86.0% | 75.7% |
| 3460815 | 109.4.1.761 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Telomere_reg-2 | 0.74 | 65.0 | 3.91e-01 | 100.0% | 22.6% |
| 3217070 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.73 | 62.0 | 4.34e-01 | 96.0% | 44.4% |
| 3404886 | 6155.1.1.0 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter | 0.72 | 58.0 | 4.94e-01 | 88.0% | 85.0% |
| 3862034 | 6155.1.1.0 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter | 0.72 | 59.0 | 4.83e-01 | 88.0% | 80.0% |
| 3237801 | 109.4.1.93 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TAF6_C | 0.71 | 60.0 | 3.89e-01 | 100.0% | 28.0% |
| 3326195 | 109.4.1.2261 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30481 | 0.71 | 62.0 | 4.11e-01 | 100.0% | 28.3% |
| 3996449 | 109.4.1.761 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Telomere_reg-2 | 0.71 | 60.0 | 3.74e-01 | 100.0% | 25.0% |
| 3733446 | 6155.1.1.2 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop | 0.70 | 58.0 | 4.73e-01 | 90.0% | 78.9% |
| 3262601 | 6155.1.1.2 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop | 0.70 | 57.0 | 4.82e-01 | 92.0% | 80.0% |
| 4179237 | 6028.1.1.0 ↗ | alpha bundles › Ribosome modulation factor › Ribosome modulation factor › Ribosome modulation factor | 0.69 | 54.0 | 5.05e-01 | 90.0% | 83.1% |
| 3470962 | 6155.1.1.2 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop | 0.69 | 57.0 | 4.73e-01 | 90.0% | 82.4% |
| 3214140 | 6155.1.1.2 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop | 0.68 | 56.0 | 4.43e-01 | 90.0% | 71.0% |
| 3948449 | 639.1.1.1 ↗ | alpha arrays › HHA-like › Hemolysin expression modulating protein HHA › Hemolysin expression modulating protein HHA › HHA | 0.67 | 54.0 | 4.87e-01 | 94.0% | 68.9% |
| 4001664 | 109.4.1.371 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RTP1_C1 | 0.66 | 53.0 | 3.01e-01 | 100.0% | 11.1% |
| 3423908 | 6155.1.1.0 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter | 0.65 | 52.0 | 4.40e-01 | 96.0% | 88.4% |
| 3248284 | 622.4.1.0 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related | 0.63 | 52.0 | 4.22e-01 | 100.0% | 77.1% |
| 3476298 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.63 | 52.0 | 3.83e-01 | 100.0% | 38.7% |
| 3487499 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.62 | 49.0 | 3.83e-01 | 100.0% | 45.9% |
| 5036274 | 6155.1.1.0 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter | 0.60 | 47.0 | 4.22e-01 | 94.0% | 87.5% |
| 4028104 | 6155.1.1.2 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop | 0.59 | 45.0 | 3.87e-01 | 94.0% | 74.7% |
| 3285087 | 7014.1.1.1 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA | 0.57 | 44.0 | 3.42e-01 | 90.0% | 50.0% |
| 3920438 | 150.3.1.4 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine › IFN-gamma | 0.57 | 44.0 | 3.21e-01 | 90.0% | 52.3% |
| 4029237 | 544.1.1.0 ↗ | alpha bundles › Functional domain of the splicing factor Prp18 › Functional domain of the splicing factor Prp18 › Functional domain of the splicing factor Prp18 | 0.57 | 44.0 | 3.62e-01 | 92.0% | 47.6% |
| 3924442 | 604.6.1.1 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT | 0.54 | 41.0 | 3.52e-01 | 100.0% | 72.7% |
| 3650207 | 568.1.1.0 ↗ | few secondary structure elements › p8-MTCP1-related › p8-MTCP1-related › p8-MTCP1-related | 0.53 | 37.0 | 2.88e-01 | 72.0% | 83.6% |
| 3295126 | 568.1.1.4 ↗ | few secondary structure elements › p8-MTCP1-related › p8-MTCP1-related › p8-MTCP1-related › CHCH | 0.52 | 35.0 | 2.69e-01 | 70.0% | 62.9% |
| 3289420 | 2004.1.1.430 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, ABC_tran_Xtn | 0.51 | 42.0 | 2.50e-01 | 100.0% | 68.1% |
| 3635760 | 2004.1.1.98 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad17 | 0.51 | 39.0 | 2.62e-01 | 100.0% | 53.5% |