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IMGVR_UViG_2788499920_000001-2788499920-2788989487
Arc-VirIMGVR_UViG_2788499920_000001-2788499920-2788989487
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-90
Domain cluster:
rep: IMGVR_UViG_3300048114_000341-3300048114-Ga0494428_0000018_19163_19501__D12-87
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5ycqA00 | 2.30.30.390 | Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain | 0.79 | 51.0 | 5.19e-01 | 100.0% | 67.5% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4965721 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.82 | 77.0 | 6.65e-01 | 100.0% | 73.0% |
| 4027263 | 4.1.1.104 ↗ | beta barrels › SH3 › SH3 › SH3 › KN17_SH3 | 0.81 | 55.0 | 4.65e-01 | 100.0% | 45.8% |
| 3886139 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.75 | 52.0 | 5.67e-01 | 100.0% | 86.2% |
| 3650458 | 4.1.1.25 ↗ | beta barrels › SH3 › SH3 › SH3 › PAZ | 0.73 | 64.0 | 5.79e-01 | 94.9% | 88.6% |
| 3457106 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.70 | 49.0 | 5.36e-01 | 100.0% | 87.7% |
| 3177469 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 51.0 | 5.42e-01 | 100.0% | 87.1% |
| 3333322 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.69 | 49.0 | 4.00e-01 | 100.0% | 43.0% |
| 4996612 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 60.0 | 5.27e-01 | 97.5% | 79.2% |
| 3241663 | 4.1.1.25 ↗ | beta barrels › SH3 › SH3 › SH3 › PAZ | 0.69 | 61.0 | 5.35e-01 | 97.5% | 71.3% |
| 3938415 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.68 | 52.0 | 5.70e-01 | 100.0% | 98.5% |
| 3706730 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 52.0 | 5.27e-01 | 100.0% | 98.8% |
| 3602836 | 284.1.3.6 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › DUF749 | 0.56 | 44.0 | 4.16e-01 | 87.3% | 76.0% |
| 3636464 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.51 | 42.0 | 3.52e-01 | 91.1% | 72.1% |
| 4659121 | 814.1.1.2 ↗ | a+b two layers › Chorismate lyase › Chorismate lyase › Chorismate lyase › Chor_lyase | 0.51 | 42.0 | 3.26e-01 | 91.1% | 44.7% |
| 3229807 | 822.1.1.0 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain | 0.51 | 30.0 | 3.04e-01 | 88.6% | 55.0% |
D2
high
residues 95-147
Domain cluster:
representative
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3w7tA03 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.75 | 58.0 | 3.39e-01 | 84.9% | 14.9% |
| 2gnoA03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.75 | 63.0 | 5.17e-01 | 96.2% | 99.0% |
| 2b8iA00 | 1.20.1280.100 | Mainly Alpha › Up-down Bundle › Monooxygenase › Pas factor, saposin domain | 0.74 | 63.0 | 5.59e-01 | 96.2% | 76.6% |
| 1x4oA00 | 1.10.10.790 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Surp module | 0.70 | 60.0 | 5.33e-01 | 100.0% | 80.8% |
| 3m3mA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.70 | 56.0 | 4.44e-01 | 92.5% | 72.4% |
| 4hehA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.68 | 53.0 | 4.63e-01 | 86.8% | 78.3% |
| 2dt7B01 | 1.10.10.790 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Surp module | 0.68 | 56.0 | 5.45e-01 | 96.2% | 100.0% |
| 2chpA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.67 | 55.0 | 4.04e-01 | 94.3% | 56.8% |
| 3pubA01 | 1.10.10.2400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Lepidopteran low molecular weight (30 kD) lipoprotein, N-terminal domain | 0.67 | 52.0 | 4.80e-01 | 92.5% | 68.9% |
| 1rp3G02 | 1.20.140.160 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain | 0.66 | 53.0 | 3.92e-01 | 88.7% | 90.1% |
| 3gonA02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.66 | 50.0 | 3.76e-01 | 83.0% | 53.7% |
| 2p0tA02 | 1.10.60.30 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › PSPTO4464-like domains | 0.66 | 51.0 | 4.68e-01 | 94.3% | 63.9% |
| 3iuoA00 | 1.10.10.1390 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ATP-dependent DNA helicase RecQ | 0.66 | 52.0 | 4.25e-01 | 98.1% | 45.0% |
| 1lkoA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.65 | 49.0 | 3.63e-01 | 84.9% | 86.9% |
| 4fe7A03 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.64 | 53.0 | 4.32e-01 | 98.1% | 56.0% |
| 4iggA01 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.64 | 44.0 | 4.06e-01 | 79.2% | 55.2% |
| 1su0B00 | 3.90.1010.10 | Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › | 0.63 | 49.0 | 3.82e-01 | 94.3% | 72.8% |
| 4ap2B01 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.62 | 49.0 | 3.79e-01 | 90.6% | 44.0% |
| 1e52A00 | 4.10.860.10 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain | 0.62 | 44.0 | 4.37e-01 | 77.4% | 75.0% |
| 2ptfB02 | 1.20.58.290 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. | 0.59 | 46.0 | 4.59e-01 | 88.7% | 100.0% |
| 4u1cA01 | 4.10.860.10 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain | 0.59 | 46.0 | 4.70e-01 | 86.8% | 92.3% |
| 1dd3A01 | 1.20.5.710 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Single helix bin | 0.58 | 44.0 | 4.36e-01 | 84.9% | 84.2% |
| 1kaeA03 | 1.20.5.1300 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.58 | 40.0 | 3.96e-01 | 71.7% | 67.3% |
| 1e2aA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.58 | 43.0 | 3.67e-01 | 88.7% | 82.4% |
| 2rklF00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.57 | 40.0 | 4.05e-01 | 75.5% | 75.0% |
| 3l8rA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.57 | 44.0 | 3.72e-01 | 90.6% | 84.3% |
| 1b72A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.56 | 46.0 | 4.36e-01 | 100.0% | 77.9% |
| 2pmrA00 | 1.20.1270.90 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like | 0.56 | 41.0 | 3.68e-01 | 77.4% | 59.2% |
| 2p4vA01 | 1.10.287.180 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain | 0.55 | 38.0 | 3.45e-01 | 73.6% | 51.3% |
| 3t9jA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.53 | 42.0 | 3.12e-01 | 86.8% | 46.5% |
| 1q2lA04 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.53 | 43.0 | 2.86e-01 | 90.6% | 56.6% |
| 3qhbA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.53 | 43.0 | 3.08e-01 | 96.2% | 50.3% |
| 2fo7A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.52 | 39.0 | 3.02e-01 | 84.9% | 51.5% |
| 1z0pA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 39.0 | 3.51e-01 | 83.0% | 67.1% |
| 1f6fA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.50 | 38.0 | 2.74e-01 | 88.7% | 43.2% |
| 2p5kA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 37.0 | 3.65e-01 | 90.6% | 100.0% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3677513 | 109.4.1.1295 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, TPR_24 | 0.79 | 60.0 | 3.59e-01 | 81.1% | 14.1% |
| 3424690 | 109.4.1.1271 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, TPR_24 | 0.78 | 61.0 | 3.68e-01 | 83.0% | 15.3% |
| 3455615 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.78 | 60.0 | 3.93e-01 | 81.1% | 23.5% |
| 4061283 | 4030.1.1.0 ↗ | alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz | 0.78 | 65.0 | 6.74e-01 | 92.5% | 100.0% |
| 3647086 | 109.4.1.189 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 | 0.76 | 55.0 | 3.93e-01 | 77.4% | 30.7% |
| 4680489 | 1002.1.1.1 ↗ | alpha complex topology › Fluoride ion channel › Fluoride ion channel › Fluoride ion channel › CRCB | 0.75 | 59.0 | 4.45e-01 | 84.9% | 64.0% |
| 3934293 | 109.40.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › Ctf4_C | 0.73 | 59.0 | 4.74e-01 | 90.6% | 46.7% |
| 3628123 | 109.40.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › Ctf4_C | 0.72 | 58.0 | 4.48e-01 | 90.6% | 40.8% |
| 3335296 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.70 | 53.0 | 4.34e-01 | 83.0% | 49.0% |
| 3388765 | 4048.1.1.0 ↗ | alpha bundles › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases | 0.70 | 51.0 | 5.28e-01 | 81.1% | 92.0% |
| 4094359 | 4030.1.1.0 ↗ | alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz | 0.69 | 56.0 | 5.73e-01 | 96.2% | 100.0% |
| 3915 | 574.1.1.1 ↗ | alpha bundles › Surp module (SWAP domain) › Surp module (SWAP domain) › Surp module (SWAP domain) › Surp | 0.68 | 57.0 | 5.03e-01 | 100.0% | 72.6% |
| 3709217 | 574.1.1.1 ↗ | alpha bundles › Surp module (SWAP domain) › Surp module (SWAP domain) › Surp module (SWAP domain) › Surp | 0.67 | 57.0 | 5.25e-01 | 98.1% | 91.4% |
| 2325850 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.67 | 53.0 | 5.45e-01 | 100.0% | 96.1% |
| 3704038 | 574.1.1.1 ↗ | alpha bundles › Surp module (SWAP domain) › Surp module (SWAP domain) › Surp module (SWAP domain) › Surp | 0.66 | 56.0 | 5.17e-01 | 100.0% | 94.3% |
| 3785992 | 574.1.1.2 ↗ | alpha bundles › Surp module (SWAP domain) › Surp module (SWAP domain) › Surp module (SWAP domain) › Surp,PRP21_like_P | 0.64 | 56.0 | 3.78e-01 | 100.0% | 30.5% |
| 3753240 | 3291.1.1.54 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › CC2D1A-B_DM14 | 0.63 | 45.0 | 3.12e-01 | 75.5% | 24.1% |
| 5023517 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.63 | 50.0 | 4.14e-01 | 88.7% | 53.7% |
| 4328699 | 150.3.1.1 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine › Hormone_1 | 0.57 | 47.0 | 3.28e-01 | 94.3% | 73.2% |
| 4960328 | 150.1.1.3 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Rubrerythrin | 0.57 | 45.0 | 3.17e-01 | 88.7% | 87.4% |
| 4218480 | 5069.1.1.0 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes | 0.56 | 39.0 | 3.05e-01 | 77.4% | 68.1% |
| 3463348 | 226.1.1.0 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain | 0.54 | 42.0 | 3.85e-01 | 92.5% | 100.0% |