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IMGVR_UViG_2788500553_000001-2788500553-2791098260
Arc-VirIMGVR_UViG_2788500553_000001-2788500553-2791098260
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-67
Domain cluster:
representative
CATH (41)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2dhkA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.75 | 53.0 | 4.31e-01 | 74.5% | 41.0% |
| 4jn7A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.73 | 57.0 | 4.43e-01 | 85.5% | 82.4% |
| 1whqA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.73 | 62.0 | 5.72e-01 | 94.5% | 76.1% |
| 7r97A02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.73 | 56.0 | 5.19e-01 | 81.8% | 73.5% |
| 2ltsA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.70 | 56.0 | 4.82e-01 | 90.9% | 55.8% |
| 2nugB02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.70 | 57.0 | 5.17e-01 | 87.3% | 71.8% |
| 2l2nA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.69 | 58.0 | 5.25e-01 | 89.1% | 74.6% |
| 2nmlA00 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.69 | 47.0 | 3.94e-01 | 72.7% | 91.0% |
| 2rs7A01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.69 | 58.0 | 5.21e-01 | 90.9% | 70.3% |
| 1di2A00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.68 | 54.0 | 5.03e-01 | 90.9% | 68.1% |
| 1v5pA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.68 | 47.0 | 3.92e-01 | 74.5% | 43.7% |
| 1mgtA01 | 3.30.160.70 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Methylated DNA-protein cysteine methyltransferase domain | 0.68 | 59.0 | 5.03e-01 | 98.2% | 60.2% |
| 3ef2A02 | 3.30.460.70 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › | 0.68 | 46.0 | 3.43e-01 | 72.7% | 28.3% |
| 1vwxS01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.67 | 47.0 | 4.39e-01 | 74.5% | 77.5% |
| 2dmyA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.66 | 55.0 | 4.58e-01 | 96.4% | 52.6% |
| 1vwxS02 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.65 | 47.0 | 4.24e-01 | 76.4% | 69.7% |
| 2k2jA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.64 | 44.0 | 3.46e-01 | 72.7% | 39.3% |
| 3cm1A00 | 2.30.31.20 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB | 0.64 | 45.0 | 3.41e-01 | 74.5% | 31.6% |
| 7oufB01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.63 | 54.0 | 4.03e-01 | 100.0% | 51.0% |
| 2pw9C03 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.63 | 55.0 | 4.11e-01 | 98.2% | 52.2% |
| 2kvtA00 | 3.30.730.30 | Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein | 0.63 | 49.0 | 4.57e-01 | 89.1% | 73.2% |
| 2cy5A00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.61 | 45.0 | 3.44e-01 | 80.0% | 51.2% |
| 4a18X01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.61 | 51.0 | 4.60e-01 | 96.4% | 81.0% |
| 5cxxB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.60 | 47.0 | 3.10e-01 | 90.9% | 90.5% |
| 1z1bA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.60 | 41.0 | 4.14e-01 | 90.9% | 70.2% |
| 6wo0A01 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.57 | 46.0 | 3.26e-01 | 100.0% | 46.0% |
| 3dohA02 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.57 | 43.0 | 2.97e-01 | 89.1% | 97.5% |
| 1xteA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.57 | 45.0 | 3.66e-01 | 90.9% | 74.1% |
| 2zkmX01 | 2.30.29.240 | Mainly Beta › Roll › PH-domain like › | 0.57 | 45.0 | 3.15e-01 | 94.5% | 90.3% |
| 2rajA02 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.56 | 43.0 | 3.48e-01 | 90.9% | 69.0% |
| 4oxwA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.55 | 41.0 | 3.39e-01 | 81.8% | 97.2% |
| 2kwpA00 | 3.30.1480.10 | Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain | 0.55 | 41.0 | 3.12e-01 | 100.0% | 34.1% |
| 1ah5A03 | 3.30.160.40 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain | 0.55 | 45.0 | 3.96e-01 | 96.4% | 62.8% |
| 4l8nA03 | 3.30.160.670 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.54 | 41.0 | 3.09e-01 | 89.1% | 57.3% |
| 6l4lA02 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.54 | 48.0 | 3.55e-01 | 100.0% | 97.1% |
| 3oqgA00 | 3.40.1440.50 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › | 0.53 | 40.0 | 2.83e-01 | 81.8% | 59.1% |
| 2v8pA01 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.52 | 40.0 | 3.08e-01 | 90.9% | 46.5% |
| 2z6oA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.52 | 38.0 | 2.89e-01 | 87.3% | 64.5% |
| 2gcuA01 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.51 | 40.0 | 2.80e-01 | 96.4% | 45.1% |
| 5r0dB01 | 2.60.34.20 | Mainly Beta › Sandwich › Substrate Binding Domain Of DNAk; Chain A, domain 1 › | 0.51 | 38.0 | 3.01e-01 | 89.1% | 82.5% |
| 3q6aB00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 38.0 | 3.02e-01 | 87.3% | 38.1% |
ECOD (51)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3599325 | 220.1.1.92 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Mcp5_PH | 0.81 | 54.0 | 3.86e-01 | 74.5% | 25.3% |
| 5020790 | 4100.1.1.0 ↗ | a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like | 0.80 | 64.0 | 6.43e-01 | 100.0% | 85.5% |
| 3254167 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.80 | 56.0 | 3.41e-01 | 74.5% | 12.2% |
| 3715477 | 220.1.1.92 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Mcp5_PH | 0.78 | 51.0 | 3.79e-01 | 72.7% | 27.4% |
| 3797651 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.78 | 65.0 | 5.40e-01 | 92.7% | 54.4% |
| 3470251 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.77 | 54.0 | 4.32e-01 | 74.5% | 38.2% |
| 3514659 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.77 | 66.0 | 5.26e-01 | 94.5% | 50.0% |
| 3403381 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.75 | 60.0 | 4.83e-01 | 92.7% | 47.0% |
| 3933098 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.75 | 56.0 | 5.30e-01 | 92.7% | 67.7% |
| 3452167 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.71 | 59.0 | 4.42e-01 | 90.9% | 42.3% |
| 3492440 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.70 | 60.0 | 4.50e-01 | 92.7% | 40.8% |
| 3297925 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.70 | 58.0 | 5.62e-01 | 89.1% | 98.3% |
| 3619264 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.69 | 58.0 | 4.87e-01 | 90.9% | 57.8% |
| 3272573 | 4210.1.1.0 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain | 0.68 | 59.0 | 5.33e-01 | 98.2% | 70.7% |
| 3317750 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.66 | 51.0 | 3.68e-01 | 89.1% | 30.7% |
| 3495550 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.64 | 52.0 | 4.25e-01 | 90.9% | 67.6% |
| 3596066 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.64 | 50.0 | 3.84e-01 | 100.0% | 37.6% |
| 3651210 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.64 | 51.0 | 5.02e-01 | 96.4% | 86.7% |
| 3300995 | 2484.1.1.67 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 | 0.62 | 54.0 | 4.08e-01 | 100.0% | 76.3% |
| 3544618 | 4292.2.1.0 ↗ | a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain | 0.62 | 46.0 | 4.00e-01 | 80.0% | 71.8% |
| 3540167 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.60 | 49.0 | 3.72e-01 | 96.4% | 37.0% |
| 3786329 | 386.1.1.1 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 | 0.60 | 41.0 | 4.19e-01 | 92.7% | 74.5% |
| 3728986 | 4041.1.1.1 ↗ | a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 | 0.59 | 46.0 | 3.19e-01 | 83.6% | 65.6% |
| 3589823 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.59 | 44.0 | 4.15e-01 | 100.0% | 66.2% |
| 3816553 | 4.1.1.306 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_VIII-1_N | 0.58 | 39.0 | 3.95e-01 | 72.7% | 69.1% |
| 3456692 | 386.1.1.4 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED | 0.58 | 44.0 | 4.41e-01 | 96.4% | 86.4% |
| 3226939 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.58 | 43.0 | 3.59e-01 | 90.9% | 45.0% |
| 4004358 | 252.2.1.3 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_1 | 0.57 | 42.0 | 4.36e-01 | 89.1% | 88.0% |
| 3250605 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.56 | 45.0 | 3.57e-01 | 92.7% | 70.4% |
| 3295296 | 4.8.1.7 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › SAWADEE | 0.56 | 40.0 | 4.30e-01 | 80.0% | 91.1% |
| None | — | 0.56 | 41.0 | 3.01e-01 | 81.8% | 60.0% | |
| 4926891 | 377.1.1.126 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Arc_trans_TRASH | 0.56 | 40.0 | 4.28e-01 | 78.2% | 100.0% |
| 5001270 | 512.1.1.0 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) | 0.56 | 42.0 | 3.84e-01 | 87.3% | 67.5% |
| 3927894 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.56 | 43.0 | 3.43e-01 | 92.7% | 86.7% |
| 3248668 | 79.1.1.0 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain | 0.55 | 39.0 | 3.58e-01 | 85.5% | 53.8% |
| 3220873 | 214.1.1.9 ↗ | a+b two layers › SH2 › SH2 › SH2 › DUF7063 | 0.55 | 46.0 | 3.87e-01 | 98.2% | 68.0% |
| 4434012 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.54 | 44.0 | 3.89e-01 | 94.5% | 63.5% |
| 3774525 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.54 | 42.0 | 3.12e-01 | 90.9% | 47.8% |
| 3623534 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.54 | 40.0 | 3.34e-01 | 90.9% | 47.8% |
| 3938274 | 2003.1.3.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain | 0.54 | 44.0 | 2.96e-01 | 90.9% | 96.1% |
| 3038786 | 298.1.1.8 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C | 0.54 | 41.0 | 2.78e-01 | 85.5% | 99.1% |
| 3679340 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.53 | 40.0 | 3.46e-01 | 92.7% | 89.1% |
| 5050532 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.53 | 42.0 | 2.79e-01 | 96.4% | 95.5% |
| 4029709 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.52 | 40.0 | 3.24e-01 | 90.9% | 74.4% |
| 3518948 | 214.1.1.9 ↗ | a+b two layers › SH2 › SH2 › SH2 › DUF7063 | 0.52 | 43.0 | 3.86e-01 | 98.2% | 92.9% |
| 3598055 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 47.0 | 3.39e-01 | 100.0% | 56.0% |
| 3235708 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.52 | 42.0 | 3.58e-01 | 98.2% | 68.0% |
| 3106025 | 4967.1.1.11 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › GIIM | 0.51 | 42.0 | 3.08e-01 | 90.9% | 75.7% |
| 5070387 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.51 | 38.0 | 3.55e-01 | 83.6% | 61.3% |
| 4995163 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.50 | 39.0 | 2.78e-01 | 100.0% | 29.2% |
| 3780755 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.50 | 43.0 | 2.88e-01 | 98.2% | 70.0% |